Information for 15-NVCATGCATGCNN (Motif 25)

A T G C T A C G T A G C T G C A G A C T A C T G T A G C T C G A A G C T A T C G A T G C T A G C A G C T
Reverse Opposite:
T C G A A T C G A T C G T A G C T C G A A G C T A T C G G T A C C T G A A C G T A T C G A T G C T A C G
p-value:1e-3
log p-value:-8.636e+00
Information Content per bp:1.375
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.23%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets25.4 +/- 27.9bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:1
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:NVCATGCATGCNN
---TTGCGTGCVA
 A T G C T A C G T A G C T G C A G A C T A C T G T A G C T C G A A G C T A T C G A T G C T A G C A G C T
A C G T A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:NVCATGCATGCNN--
GTCATGCHTGRCTGS
 A T G C T A C G T A G C T G C A G A C T A C T G T A G C T C G A A G C T A T C G A T G C T A G C A G C T A C G T A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---NVCATGCATGCNN
NNTNTCATGAATGT--
 A C G T A C G T A C G T A T G C T A C G T A G C T G C A G A C T A C T G T A G C T C G A A G C T A T C G A T G C T A G C A G C T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:4
Score:0.63
Offset:4
Orientation:forward strand
Alignment:NVCATGCATGCNN
----TGCGTG---
 A T G C T A C G T A G C T G C A G A C T A C T G T A G C T C G A A G C T A T C G A T G C T A G C A G C T
A C G T A C G T A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---NVCATGCATGCNN-
GACCACATTCATACAAT
 A C G T A C G T A C G T A T G C T A C G T A G C T G C A G A C T A C T G T A G C T C G A A G C T A T C G A T G C T A G C A G C T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---NVCATGCATGCNN
GCAGCCAAGCGTGACN
 A C G T A C G T A C G T A T G C T A C G T A G C T G C A G A C T A C T G T A G C T C G A A G C T A T C G A T G C T A G C A G C T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

NRF(NRF)/Promoter/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:NVCATGCATGCNN
-GTGCGCATGCGC
 A T G C T A C G T A G C T G C A G A C T A C T G T A G C T C G A A G C T A T C G A T G C T A G C A G C T
A C G T A T C G A G C T A C T G A G T C A C T G A G T C C G T A A C G T A C T G A G T C A C T G A G T C

TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:NVCATGCATGCNN
-CCWGGAATGY--
 A T G C T A C G T A G C T G C A G A C T A C T G T A G C T C G A A G C T A T C G A T G C T A G C A G C T
A C G T A T G C G A T C C G A T C T A G A C T G G C T A C G T A A G C T A C T G A G C T A C G T A C G T

PAX1/MA0779.1/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-NVCATGCATGCNN---
CGTCACGCATGACTGCA
 A C G T A T G C T A C G T A G C T G C A G A C T A C T G T A G C T C G A A G C T A T C G A T G C T A G C A G C T A C G T A C G T A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-NVCATGCATGCNN
NNACTTGCCTT---
 A C G T A T G C T A C G T A G C T G C A G A C T A C T G T A G C T C G A A G C T A T C G A T G C T A G C A G C T
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T