Information for 4-TTCTGTTGTTGGDTGC (Motif 6)

A C G T A G C T A T G C C G A T A T C G A C G T A C G T A C T G C G A T A C G T A C T G C T A G C T A G A C G T A C T G A T G C
Reverse Opposite:
A T C G G T A C G T C A G A C T A G T C A G T C G T C A C G T A A G T C C G T A C G T A A T G C C G T A A T C G C T G A C G T A
p-value:1e-8
log p-value:-1.863e+01
Information Content per bp:1.793
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif1.69%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.0 +/- 19.8bp
Average Position of motif in Background63.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0122.1_Foxk1_2/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TTCTGTTGTTGGDTGC
NNNTGTTGTTGTTNG-
 A C G T A G C T A T G C C G A T A T C G A C G T A C G T A C T G C G A T A C G T A C T G C T A G C T A G A C G T A C T G A T G C
C T G A C A T G C T A G G C A T C T A G G C A T A C G T C T A G A G C T A C G T C T A G G A C T C A G T C G A T C A T G A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:2
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TTCTGTTGTTGGDTGC
NNNNNATTGATGNGTGN
 A C G T A C G T A G C T A T G C C G A T A T C G A C G T A C G T A C T G C G A T A C G T A C T G C T A G C T A G A C G T A C T G A T G C
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

PB0093.1_Zfp105_1/Jaspar

Match Rank:3
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TTCTGTTGTTGGDTGC-
--NTNTTGTTGTTTGTN
 A C G T A G C T A T G C C G A T A T C G A C G T A C G T A C T G C G A T A C G T A C T G C T A G C T A G A C G T A C T G A T G C A C G T
A C G T A C G T G A T C C G A T G T A C C G A T G A C T C A T G G C A T A G C T C T A G C G A T C G A T C A G T C T A G G A C T C G A T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:4
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TTCTGTTGTTGGDTGC
--CCATTGTTNY----
 A C G T A G C T A T G C C G A T A T C G A C G T A C G T A C T G C G A T A C G T A C T G C T A G C T A G A C G T A C T G A T G C
A C G T A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T A C G T A C G T A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:5
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:TTCTGTTGTTGGDTGC-
-----ATGATKGATGRC
 A C G T A G C T A T G C C G A T A T C G A C G T A C G T A C T G C G A T A C G T A C T G C T A G C T A G A C G T A C T G A T G C A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

MF0011.1_HMG_class/Jaspar

Match Rank:6
Score:0.53
Offset:4
Orientation:forward strand
Alignment:TTCTGTTGTTGGDTGC
----ATTGTT------
 A C G T A G C T A T G C C G A T A T C G A C G T A C G T A C T G C G A T A C G T A C T G C T A G C T A G A C G T A C T G A T G C
A C G T A C G T A C G T A C G T G C T A A C G T G A C T C T A G G C A T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:7
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:TTCTGTTGTTGGDTGC
----TTTGATTGATGN
 A C G T A G C T A T G C C G A T A T C G A C G T A C G T A C T G C G A T A C G T A C T G C T A G C T A G A C G T A C T G A T G C
A C G T A C G T A C G T A C G T C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:TTCTGTTGTTGGDTGC
----GTTAATGGCC--
 A C G T A G C T A T G C C G A T A T C G A C G T A C G T A C T G C G A T A C G T A C T G C T A G C T A G A C G T A C T G A T G C
A C G T A C G T A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:9
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--TTCTGTTGTTGGDTGC
ANNTCCATTGTTCNNN--
 A C G T A C G T A C G T A G C T A T G C C G A T A T C G A C G T A C G T A C T G C G A T A C G T A C T G C T A G C T A G A C G T A C T G A T G C
C T G A C T G A C A G T C G A T A G T C G T A C G C T A A G C T C A G T T C A G C G A T A G C T T A G C G C T A C G A T G A C T A C G T A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-TTCTGTTGTTGGDTGC
AATCAATTGTTCCGCTA
 A C G T A C G T A G C T A T G C C G A T A T C G A C G T A C G T A C T G C G A T A C G T A C T G C T A G C T A G A C G T A C T G A T G C
T G A C T C A G A G C T A T G C G C T A C G T A A G C T C G A T A T C G C G A T A G C T A T G C T G A C A C T G G A T C C A G T T C G A