Information for 1-AGTMATGAAC (Motif 5)

C G T A A C T G C G A T T G C A C G T A A C G T A C T G C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T A G T C C G T A A C G T A C G T C G T A A G T C A C G T
p-value:1e-8
log p-value:-1.925e+01
Information Content per bp:1.911
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif3.37%
Number of Background Sequences with motif34.6
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets25.7 +/- 17.9bp
Average Position of motif in Background51.0 +/- 21.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEOX2/MA0706.1/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AGTMATGAAC
AGTAATTAAC
 C G T A A C T G C G A T T G C A C G T A A C G T A C T G C G T A C G T A A G T C
C T G A T A C G G A C T T G C A G T C A C A G T A G C T C T G A C G T A T G A C

PH0073.1_Hoxc9/Jaspar

Match Rank:2
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---AGTMATGAAC---
GGAGGTCATTAATTAT
 A C G T A C G T A C G T C G T A A C T G C G A T T G C A C G T A A C G T A C T G C G T A C G T A A G T C A C G T A C G T A C G T
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGTMATGAAC-
GGTAATAAAAA
 C G T A A C T G C G A T T G C A C G T A A C G T A C T G C G T A C G T A A G T C A C G T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

MEOX1/MA0661.1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGTMATGAAC
GCTAATTAAC
 C G T A A C T G C G A T T G C A C G T A A C G T A C T G C G T A C G T A A G T C
T C A G T A G C G A C T T G C A C G T A G A C T A C G T C T G A G T C A T A G C

PB0178.1_Sox8_2/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AGTMATGAAC--
NNTNTCATGAATGT
 A C G T A C G T C G T A A C T G C G A T T G C A C G T A A C G T A C T G C G T A C G T A A G T C A C G T A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AGTMATGAAC-
-GTCATAAAAN
 C G T A A C T G C G A T T G C A C G T A A C G T A C T G C G T A C G T A A G T C A C G T
A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

PH0017.1_Cux1_2/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGTMATGAAC----
TAATGATGATCACTA
 A C G T C G T A A C T G C G A T T G C A C G T A A C G T A C T G C G T A C G T A A G T C A C G T A C G T A C G T A C G T
C G A T T G C A T C G A A G C T C A T G G C T A C G A T C T A G C G T A C A G T G A T C T C G A G T A C C G A T C G T A

VAX2/MA0723.1/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AGTMATGAAC
-NTAATTAG-
 C G T A A C T G C G A T T G C A C G T A A C G T A C T G C G T A C G T A A G T C
A C G T T C A G G A C T G T C A G C T A C G A T C A G T C T G A T C A G A C G T

HNF1A/MA0046.2/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----AGTMATGAAC-
AGTTAATGATTAACT
 A C G T A C G T A C G T A C G T C G T A A C T G C G A T T G C A C G T A A C G T A C T G C G T A C G T A A G T C A C G T
C T G A C T A G A G C T G C A T C T G A G T C A G C A T T A C G C G T A C A G T G A C T C G T A T C G A G T A C G C A T

CDX1/MA0878.1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AGTMATGAAC
-GCAATAAAA
 C G T A A C T G C G A T T G C A C G T A A C G T A C T G C G T A C G T A A G T C
A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A