Information for 10-GATGTTAATG (Motif 19)

A C T G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T A C T G
Reverse Opposite:
A G T C C G T A A C G T A C G T C G T A C G T A A G T C C G T A A C G T A G T C
p-value:1e-1
log p-value:-3.825e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif6.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets62.0 +/- 27.8bp
Average Position of motif in Background50.1 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)3.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GATGTTAATG--
TATGCWAATBAV
 A C T G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T A C T G A C G T A C G T
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GATGTTAATG--
WATGCAAATGAG
 A C T G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T A C T G A C G T A C G T
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:3
Score:0.71
Offset:3
Orientation:forward strand
Alignment:GATGTTAATG-
---GKTAATGR
 A C T G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T A C T G A C G T
A C G T A C G T A C G T A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:4
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GATGTTAATG
AGGTGTTAAT-
 A C G T A C T G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T A C T G
C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T

POU3F1/MA0786.1/Jaspar

Match Rank:5
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GATGTTAATG-
TTATGCAAATTA
 A C G T A C T G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T A C T G A C G T
C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

Arid3b/MA0601.1/Jaspar

Match Rank:6
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GATGTTAATG--
-ATATTAATTAA
 A C T G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T A C T G A C G T A C G T
A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

POU5F1B/MA0792.1/Jaspar

Match Rank:7
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GATGTTAATG
TATGCAAAT-
 A C T G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T A C T G
G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:GATGTTAATG---
---GTTAATGGCC
 A C T G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

POU3F2/MA0787.1/Jaspar

Match Rank:9
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GATGTTAATG-
TTATGCAAATTA
 A C G T A C T G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T A C T G A C G T
C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A

NKX6-2/MA0675.1/Jaspar

Match Rank:10
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:GATGTTAATG--
----TTAATTAN
 A C T G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T C G A T G A C T C G T A C G T A C G A T C A G T C T G A T A C G