Information for 2-AGAGTGTTAC (Motif 11)

C T G A A C T G C G T A A C T G A C G T A C T G A C G T A C G T C G T A G T A C
Reverse Opposite:
A C T G A C G T G T C A C G T A A G T C C G T A A G T C A C G T A G T C G A C T
p-value:1e-5
log p-value:-1.352e+01
Information Content per bp:1.893
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif2.25%
Number of Background Sequences with motif21.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets34.6 +/- 28.3bp
Average Position of motif in Background44.6 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AGAGTGTTAC
TTRAGTGSYK-
 A C G T C T G A A C T G C G T A A C T G A C G T A C T G A C G T A C G T C G T A G T A C
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGAGTGTTAC
AAGGTGTKAA
 C T G A A C T G C G T A A C T G A C G T A C T G A C G T A C G T C G T A G T A C
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AGAGTGTTAC-
-AGGTGTGAAM
 C T G A A C T G C G T A A C T G A C G T A C T G A C G T A C G T C G T A G T A C A C G T
A C G T C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A

Sox5/MA0087.1/Jaspar

Match Rank:4
Score:0.65
Offset:2
Orientation:forward strand
Alignment:AGAGTGTTAC
--ATTGTTA-
 C T G A A C T G C G T A A C T G A C G T A C T G A C G T A C G T C G T A G T A C
A C G T A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T A C G T

TBX2/MA0688.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGAGTGTTAC-
AAGGTGTGAAA
 C T G A A C T G C G T A A C T G A C G T A C T G A C G T A C G T C G T A G T A C A C G T
C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A

MGA/MA0801.1/Jaspar

Match Rank:6
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AGAGTGTTAC
-AGGTGTGA-
 C T G A A C T G C G T A A C T G A C G T A C T G A C G T A C G T C G T A G T A C
A C G T C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AGAGTGTTAC
TTGAGTGSTT-
 A C G T C T G A A C T G C G T A A C T G A C G T A C T G A C G T A C G T C G T A G T A C
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AGAGTGTTAC
CTYRAGTGSY--
 A C G T A C G T C T G A A C T G C G T A A C T G A C G T A C T G A C G T A C G T C G T A G T A C
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T

TBX5/MA0807.1/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AGAGTGTTAC
-AGGTGTGA-
 C T G A A C T G C G T A A C T G A C G T A C T G A C G T A C G T C G T A G T A C
A C G T C T G A T C A G A C T G A C G T C T A G A G C T A C T G C T G A A C G T

TBX4/MA0806.1/Jaspar

Match Rank:10
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AGAGTGTTAC
-AGGTGTGA-
 C T G A A C T G C G T A A C T G A C G T A C T G A C G T A C G T C G T A G T A C
A C G T C T G A T C A G T A C G A G C T A C T G G A C T A C T G C T G A A C G T