Information for 3-CADHACADCCTGGATT (Motif 4)

A G T C C G T A C A T G G A C T C G T A A T G C T G C A C A T G A T G C A T G C A C G T A C T G A C T G C G T A A C G T A C G T
Reverse Opposite:
G T C A C G T A A C G T A G T C A G T C C G T A A T C G A T C G G A T C A C G T A T C G C G A T C T G A G A T C A C G T C T A G
p-value:1e-10
log p-value:-2.320e+01
Information Content per bp:1.782
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.18%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.2 +/- 26.4bp
Average Position of motif in Background91.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF354C/MA0130.1/Jaspar

Match Rank:1
Score:0.59
Offset:9
Orientation:reverse strand
Alignment:CADHACADCCTGGATT
---------GTGGAT-
 A G T C C G T A C A T G G A C T C G T A A T G C T G C A C A T G A T G C A T G C A C G T A C T G A C T G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A C G T A C T G A C T G C G T A A C G T A C G T

PB0185.1_Tcf1_2/Jaspar

Match Rank:2
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CADHACADCCTGGATT---
-----TTGCCCGGATTAGG
 A G T C C G T A C A T G G A C T C G T A A T G C T G C A C A T G A T G C A T G C A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A C G T T C A G G A T C T A G C A G T C T A C G A C T G C T G A C A G T A C G T C G T A C A T G C T A G

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.56
Offset:6
Orientation:forward strand
Alignment:CADHACADCCTGGATT--
------NNTGTGGATTSS
 A G T C C G T A C A T G G A C T C G T A A T G C T G C A C A T G A T G C A T G C A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G

RHOXF1/MA0719.1/Jaspar

Match Rank:4
Score:0.55
Offset:10
Orientation:reverse strand
Alignment:CADHACADCCTGGATT--
----------NGGATTAN
 A G T C C G T A C A T G G A C T C G T A A T G C T G C A C A T G A T G C A T G C A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T

Pitx1/MA0682.1/Jaspar

Match Rank:5
Score:0.54
Offset:10
Orientation:reverse strand
Alignment:CADHACADCCTGGATT--
----------GGGATTAA
 A G T C C G T A C A T G G A C T C G T A A T G C T G C A C A T G A T G C A T G C A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A

FOXH1/MA0479.1/Jaspar

Match Rank:6
Score:0.54
Offset:8
Orientation:reverse strand
Alignment:CADHACADCCTGGATT---
--------TGTGGATTNNN
 A G T C C G T A C A T G G A C T C G T A A T G C T G C A C A T G A T G C A T G C A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C T G A C G T A C T G C A T G C G T A G C A T A C G T A T C G T C A G T C G A

PITX3/MA0714.1/Jaspar

Match Rank:7
Score:0.54
Offset:10
Orientation:reverse strand
Alignment:CADHACADCCTGGATT---
----------GGGATTANN
 A G T C C G T A C A T G G A C T C G T A A T G C T G C A C A T G A T G C A T G C A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:8
Score:0.53
Offset:11
Orientation:reverse strand
Alignment:CADHACADCCTGGATT---
-----------GGATTAGC
 A G T C C G T A C A T G G A C T C G T A A T G C T G C A C A T G A T G C A T G C A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:9
Score:0.53
Offset:9
Orientation:reverse strand
Alignment:CADHACADCCTGGATT---
---------VRGGATTARN
 A G T C C G T A C A T G G A C T C G T A A T G C T G C A C A T G A T G C A T G C A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.53
Offset:9
Orientation:reverse strand
Alignment:CADHACADCCTGGATT-
---------NGGGATTA
 A G T C C G T A C A T G G A C T C G T A A T G C T G C A C A T G A T G C A T G C A C G T A C T G A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A