Information for 2-AACTRKGTCT (Motif 8)

G T C A G T C A G A T C A G C T C T A G A C G T A T C G A C G T A G T C A G C T
Reverse Opposite:
C T G A A C T G C G T A T A G C T G C A G A T C T C G A C T A G C A G T C A G T
p-value:1e-5
log p-value:-1.192e+01
Information Content per bp:1.679
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif12.90%
Number of Background Sequences with motif1709.6
Percentage of Background Sequences with motif3.46%
Average Position of motif in Targets54.0 +/- 28.5bp
Average Position of motif in Background49.9 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.70
Offset:2
Orientation:forward strand
Alignment:AACTRKGTCT--
--VBSYGTCTGG
 G T C A G T C A G A T C A G C T C T A G A C G T A T C G A C G T A G T C A G C T A C G T A C G T
A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.70
Offset:4
Orientation:forward strand
Alignment:AACTRKGTCT--
----CTGTCTGG
 G T C A G T C A G A T C A G C T C T A G A C G T A T C G A C G T A G T C A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.68
Offset:4
Orientation:forward strand
Alignment:AACTRKGTCT--
----TWGTCTGV
 G T C A G T C A G A T C A G C T C T A G A C G T A T C G A C G T A G T C A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AACTRKGTCT-------
NNTNNTGTCTGGNNTNG
 G T C A G T C A G A T C A G C T C T A G A C G T A T C G A C G T A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AACTRKGTCT
AAYTAGGTCA
 G T C A G T C A G A T C A G C T C T A G A C G T A T C G A C G T A G T C A G C T
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

RORA(var.2)/MA0072.1/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AACTRKGTCT-
TATAAGTAGGTCAA
 A C G T A C G T A C G T G T C A G T C A G A T C A G C T C T A G A C G T A T C G A C G T A G T C A G C T A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:AACTRKGTCT-------
-----TGTCTGDCACCT
 G T C A G T C A G A T C A G C T C T A G A C G T A T C G A C G T A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AACTRKGTCT
ATCAAGGTCA
 G T C A G T C A G A T C A G C T C T A G A C G T A T C G A C G T A G T C A G C T
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A

PB0166.1_Sox12_2/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AACTRKGTCT----
ANTCCTTTGTCTNNNN
 A C G T A C G T G T C A G T C A G A T C A G C T C T A G A C G T A T C G A C G T A G T C A G C T A C G T A C G T A C G T A C G T
C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:10
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:AACTRKGTCT-
----NTGTCAN
 G T C A G T C A G A T C A G C T C T A G A C G T A T C G A C G T A G T C A G C T A C G T
A C G T A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A