Information for 2-GTGTTGGGTGGCT (Motif 3)

A C T G A C G T A C T G A C G T A C G T A C T G A C T G A C T G A C G T A C T G A C T G G T A C A C G T
Reverse Opposite:
G T C A A C T G A G T C A G T C C G T A A G T C A G T C A G T C C G T A C G T A A G T C C G T A G T A C
p-value:1e-8
log p-value:-1.887e+01
Information Content per bp:1.950
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif1.80%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.8 +/- 27.7bp
Average Position of motif in Background71.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0167.1_Sox13_2/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GTGTTGGGTGGCT----
GTATTGGGTGGGTAATT
 A C T G A C G T A C T G A C G T A C G T A C T G A C T G A C T G A C G T A C T G A C T G G T A C A C G T A C G T A C G T A C G T A C G T
C T A G C G A T C T G A G A C T A G C T C A T G C A T G C T A G G C A T A C T G C A T G C A T G C G A T G C T A G C A T G C A T C A G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GTGTTGGGTGGCT
--CTTGAGTGGCT
 A C T G A C G T A C T G A C G T A C G T A C T G A C T G A C T G A C G T A C T G A C T G G T A C A C G T
A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

PB0092.1_Zbtb7b_1/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GTGTTGGGTGGCT-
ATTTTNGGGGGGCNN
 A C G T A C T G A C G T A C T G A C G T A C G T A C T G A C T G A C T G A C G T A C T G A C T G G T A C A C G T A C G T
T C G A C A G T G C A T C G A T C G A T C G A T C A T G C T A G A C T G A C T G A C T G A T C G A G T C G A C T G A C T

PB0029.1_Hic1_1/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GTGTTGGGTGGCT----
-NGTAGGTTGGCATNNN
 A C T G A C G T A C T G A C G T A C G T A C T G A C T G A C T G A C G T A C T G A C T G G T A C A C G T A C G T A C G T A C G T A C G T
A C G T C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GTGTTGGGTGGCT-
--CGTGGGTGGTCC
 A C T G A C G T A C T G A C G T A C G T A C T G A C T G A C T G A C G T A C T G A C T G G T A C A C G T A C G T
A C G T A C G T A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C

PH0115.1_Nkx2-6/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GTGTTGGGTGGCT--
AATNTTAAGTGGNTNN
 A C G T A C T G A C G T A C T G A C G T A C G T A C T G A C T G A C T G A C G T A C T G A C T G G T A C A C G T A C G T A C G T
C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A

ZNF740/MA0753.1/Jaspar

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GTGTTGGGTGGCT
--GTGGGGGGGG-
 A C T G A C G T A C T G A C G T A C G T A C T G A C T G A C T G A C G T A C T G A C T G G T A C A C G T
A C G T A C G T C T A G C A G T C A T G A C T G T C A G C T A G C T A G C A T G C A T G A C T G A C G T

PB0110.1_Bcl6b_2/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GTGTTGGGTGGCT--
NNTNAGGGGCGGNNNN
 A C G T A C T G A C G T A C T G A C G T A C G T A C T G A C T G A C T G A C G T A C T G A C T G G T A C A C G T A C G T A C G T
A C G T C G A T C A G T C A G T G C T A T A C G T A C G A C T G C A T G G A T C C T A G C T A G T A C G T A C G T C G A C A G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GTGTTGGGTGGCT--
AATTTCAAGTGGCTTN
 A C G T A C T G A C G T A C T G A C G T A C G T A C T G A C T G A C T G A C G T A C T G A C T G G T A C A C G T A C G T A C G T
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GTGTTGGGTGGCT-
--GTGGCGTGACNG
 A C T G A C G T A C T G A C G T A C G T A C T G A C T G A C T G A C G T A C T G A C T G G T A C A C G T A C G T
A C G T A C G T T C A G A C G T C A T G A C T G A T G C A T C G A C G T A T C G C T G A A G T C G A T C C A T G