Information for 9-CATAYYAACC (Motif 20)

A G T C C G T A A C G T C T G A A G C T A G T C C G T A C G T A A G T C A G T C
Reverse Opposite:
A C T G A C T G A C G T C G A T C T A G C T G A A G C T C G T A A C G T A C T G
p-value:1e-3
log p-value:-7.299e+00
Information Content per bp:1.854
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif1.20%
Number of Background Sequences with motif11.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets38.5 +/- 22.3bp
Average Position of motif in Background61.9 +/- 17.4bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0055.1_Rfx4_1/Jaspar

Match Rank:1
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CATAYYAACC--
TACCATAGCAACGGT
 A C G T A C G T A C G T A G T C C G T A A C G T C T G A A G C T A G T C C G T A C G T A A G T C A G T C A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CATAYYAACC----
ACTATGCCAACCTACC
 A C G T A C G T A G T C C G T A A C G T C T G A A G C T A G T C C G T A C G T A A G T C A G T C A C G T A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CATAYYAACC--
CCGCATAGCAACGGA
 A C G T A C G T A C G T A G T C C G T A A C G T C T G A A G C T A G T C C G T A C G T A A G T C A G T C A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----CATAYYAACC
TTGCCATGGCAACC
 A C G T A C G T A C G T A C G T A G T C C G T A A C G T C T G A A G C T A G T C C G T A C G T A A G T C A G T C
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

PB0054.1_Rfx3_1/Jaspar

Match Rank:5
Score:0.64
Offset:-7
Orientation:forward strand
Alignment:-------CATAYYAACC------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T C T G A A G C T A G T C C G T A C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CATAYYAACC-
SCCTAGCAACAG
 A C G T A G T C C G T A A C G T C T G A A G C T A G T C C G T A C G T A A G T C A G T C A C G T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

Rfx1/MA0509.1/Jaspar

Match Rank:7
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CATAYYAACC
GTTGCCATGGCAAC-
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T C T G A A G C T A G T C C G T A C G T A A G T C A G T C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CATAYYAACC--
-NNACTTACCTN
 A G T C C G T A A C G T C T G A A G C T A G T C C G T A C G T A A G T C A G T C A C G T A C G T
A C G T C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CATAYYAACC
TTGCCATGGCAACN
 A C G T A C G T A C G T A C G T A G T C C G T A A C G T C T G A A G C T A G T C C G T A C G T A A G T C A G T C
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

Hic1/MA0739.1/Jaspar

Match Rank:10
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CATAYYAACC
-ATGCCAACC
 A G T C C G T A A C G T C T G A A G C T A G T C C G T A C G T A A G T C A G T C
A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C