Information for 12-TGTGTGTDAGAGA (Motif 17)

A C G T A C T G A C G T A C T G A C G T A C T G G A C T C A T G C G T A A C T G C G T A A C T G C G T A
Reverse Opposite:
C G A T A G T C A C G T G T A C C G A T G A T C C T G A A G T C C G T A A G T C C G T A A G T C C G T A
p-value:1e-4
log p-value:-1.024e+01
Information Content per bp:1.849
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif1.80%
Number of Background Sequences with motif18.1
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets50.6 +/- 23.0bp
Average Position of motif in Background44.3 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----TGTGTGTDAGAGA
NNNNTTGTGTGCTTNN--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C T G A C G T A C T G G A C T C A T G C G T A A C T G C G T A A C T G C G T A
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:2
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----TGTGTGTDAGAGA
NNGCGTGTGTGCNGCN--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C T G A C G T A C T G G A C T C A T G C G T A A C T G C G T A A C T G C G T A
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TGTGTGTDAGAGA
TTGCGTGCVA----
 A C G T A C G T A C T G A C G T A C T G A C G T A C T G G A C T C A T G C G T A A C T G C G T A A C T G C G T A
A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T A C G T A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TGTGTGTDAGAGA
TGCGTG-------
 A C G T A C T G A C G T A C T G A C G T A C T G G A C T C A T G C G T A A C T G C G T A A C T G C G T A
G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TGTGTGTDAGAGA
TGCGTGGGYG---
 A C G T A C T G A C G T A C T G A C G T A C T G G A C T C A T G C G T A A C T G C G T A A C T G C G T A
C A G T T C A G G A T C A C T G A C G T C T A G A C T G A C T G G A C T C T A G A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:6
Score:0.53
Offset:-7
Orientation:reverse strand
Alignment:-------TGTGTGTDAGAGA
NNNCCATTGTGTNAN-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C T G A C G T A C T G G A C T C A T G C G T A A C T G C G T A A C T G C G T A
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G A C G T A C G T A C G T A C G T A C G T

TBR1/MA0802.1/Jaspar

Match Rank:7
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-TGTGTGTDAGAGA
AGGTGTGAAA----
 A C G T A C G T A C T G A C G T A C T G A C G T A C T G G A C T C A T G C G T A A C T G C G T A A C T G C G T A
C T G A C T A G A T C G A G C T A T C G G A C T A C T G C T G A G C T A G C T A A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----TGTGTGTDAGAGA
NNTNNTGTCTGGNNTNG-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C T G A C G T A C T G G A C T C A T G C G T A A C T G C G T A A C T G C G T A
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:9
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----TGTGTGTDAGAGA
CCATTGTATGCAAAT--
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C T G A C G T A C T G G A C T C A T G C G T A A C T G C G T A A C T G C G T A
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T A C G T A C G T

EOMES/MA0800.1/Jaspar

Match Rank:10
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--TGTGTGTDAGAGA
AAGGTGTGAAAAT--
 A C G T A C G T A C G T A C T G A C G T A C T G A C G T A C T G G A C T C A T G C G T A A C T G C G T A A C T G C G T A
C T G A C T G A C T A G A C T G A G C T T C A G G A C T A C T G T C G A G C T A G T C A C G T A G A C T A C G T A C G T