Information for 6-CATBWGGCTS (Motif 12)

G T A C G T C A C A G T A C T G C G T A C T A G A T C G G T A C G C A T T A C G
Reverse Opposite:
A T G C C G T A C A T G T A G C G A T C G C A T T G A C G T C A C A G T C A T G
p-value:1e-12
log p-value:-2.980e+01
Information Content per bp:1.514
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif3.78%
Number of Background Sequences with motif354.7
Percentage of Background Sequences with motif0.75%
Average Position of motif in Targets51.0 +/- 26.1bp
Average Position of motif in Background51.5 +/- 32.6bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.69
Offset:5
Orientation:reverse strand
Alignment:CATBWGGCTS
-----NGCTN
 G T A C G T C A C A G T A C T G C G T A C T A G A T C G G T A C G C A T T A C G
A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CATBWGGCTS-
---TWGTCTGV
 G T A C G T C A C A G T A C T G C G T A C T A G A T C G G T A C G C A T T A C G A C G T
A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.62
Offset:6
Orientation:forward strand
Alignment:CATBWGGCTS--
------GCTGTG
 G T A C G T C A C A G T A C T G C G T A C T A G A T C G G T A C G C A T T A C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CATBWGGCTS
BTVATTWGCATA
 A C G T A C G T G T A C G T C A C A G T A C T G C G T A C T A G A T C G G T A C G C A T T A C G
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CATBWGGCTS
CTCATTTGCATW
 A C G T A C G T G T A C G T C A C A G T A C T G C G T A C T A G A T C G G T A C G C A T T A C G
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A

RHOXF1/MA0719.1/Jaspar

Match Rank:6
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CATBWGGCTS--
----NGGATTAN
 G T A C G T C A C A G T A C T G C G T A C T A G A T C G G T A C G C A T T A C G A C G T A C G T
A C G T A C G T A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T

POU5F1B/MA0792.1/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CATBWGGCTS
-ATTTGCATA
 G T A C G T C A C A G T A C T G C G T A C T A G A T C G G T A C G C A T T A C G
A C G T G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A

Pou2f3/MA0627.1/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CATBWGGCTS---
TNTAATTTGCATACNA
 A C G T A C G T A C G T G T A C G T C A C A G T A C T G C G T A C T A G A T C G G T A C G C A T T A C G A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CATBWGGCTS---
TNTAATTTGCATACNA
 A C G T A C G T A C G T G T A C G T C A C A G T A C T G C G T A C T A G A T C G G T A C G C A T T A C G A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:10
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CATBWGGCTS
TGCCTGAGGCN-
 A C G T A C G T G T A C G T C A C A G T A C T G C G T A C T A G A T C G G T A C G C A T T A C G
G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A G T A C G T