Information for 6-CTGTTGCCAT (Motif 13)

A T G C G C A T A C T G A C G T C G A T A C T G G A T C G A T C C G T A C A G T
Reverse Opposite:
G T C A G C A T C T A G C T A G T G A C G C T A T G C A T G A C C G T A T A C G
p-value:1e-10
log p-value:-2.482e+01
Information Content per bp:1.652
Number of Target Sequences with motif117.0
Percentage of Target Sequences with motif12.93%
Number of Background Sequences with motif3102.0
Percentage of Background Sequences with motif6.73%
Average Position of motif in Targets50.8 +/- 26.8bp
Average Position of motif in Background51.0 +/- 34.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:CTGTTGCCAT--
CTGTTGCTAGGS
 A T G C G C A T A C T G A C G T C G A T A C T G G A T C G A T C C G T A C A G T A C G T A C G T
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CTGTTGCCAT-----
-GGTTGCCATGGCAA
 A T G C G C A T A C T G A C G T C G A T A C T G G A T C G A T C C G T A C A G T A C G T A C G T A C G T A C G T A C G T
A C G T C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx1/MA0509.1/Jaspar

Match Rank:3
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:CTGTTGCCAT------
--GTTGCCATGGNAAC
 A T G C G C A T A C T G A C G T C G A T A C T G G A T C G A T C C G T A C A G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CTGTTGCCAT-----
-NGTTGCCATGGCAA
 A T G C G C A T A C T G A C G T C G A T A C T G G A T C G A T C C G T A C A G T A C G T A C G T A C G T A C G T A C G T
A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:5
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CTGTTGCCAT------
CGGTTGCCATGGCAAC
 A T G C G C A T A C T G A C G T C G A T A C T G G A T C G A T C C G T A C A G T A C G T A C G T A C G T A C G T A C G T A C G T
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

PB0055.1_Rfx4_1/Jaspar

Match Rank:6
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CTGTTGCCAT----
NNCGTTGCTATGGNN
 A C G T A T G C G C A T A C T G A C G T C G A T A C T G G A T C G A T C C G T A C A G T A C G T A C G T A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CTGTTGCCAT----
NCCGTTGCTANGNGN
 A C G T A T G C G C A T A C T G A C G T C G A T A C T G G A T C G A T C C G T A C A G T A C G T A C G T A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

RFX2/MA0600.2/Jaspar

Match Rank:8
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CTGTTGCCAT-------
-CGTTGCCATGGCAACG
 A T G C G C A T A C T G A C G T C G A T A C T G G A T C G A T C C G T A C A G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:9
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CTGTTGCCAT-------
--GTTGCCATGGCAACM
 A T G C G C A T A C T G A C G T C G A T A C T G G A T C G A T C C G T A C A G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer

Match Rank:10
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTGTTGCCAT
CTGTTTAC--
 A T G C G C A T A C T G A C G T C G A T A C T G G A T C G A T C C G T A C A G T
A G T C A C G T A C T G A G C T A C G T A C G T G T C A A G T C A C G T A C G T