Information for 7-TTAGAAACTTGAR (Motif 9)

A C G T A G C T C G T A C T A G C G T A C T G A C G T A G T A C G C A T A C G T C T A G C T G A C T A G
Reverse Opposite:
G A T C G A C T G A T C G T C A C G T A A C T G A C G T A G C T A C G T G A T C G C A T C T G A C G T A
p-value:1e-8
log p-value:-1.915e+01
Information Content per bp:1.740
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.15%
Number of Background Sequences with motif39.5
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets47.8 +/- 31.0bp
Average Position of motif in Background49.5 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TTAGAAACTTGAR
TTTGAAACCG---
 A C G T A G C T C G T A C T A G C G T A C T G A C G T A G T A C G C A T A C G T C T A G C T G A C T A G
A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G A C G T A C G T A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:2
Score:0.65
Offset:3
Orientation:forward strand
Alignment:TTAGAAACTTGAR--
---GWAAYHTGAKMC
 A C G T A G C T C G T A C T A G C G T A C T G A C G T A G T A C G C A T A C G T C T A G C T G A C T A G A C G T A C G T
A C G T A C G T A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:3
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TTAGAAACTTGAR--
---GWAAYHTGABMC
 A C G T A G C T C G T A C T A G C G T A C T G A C G T A G T A C G C A T A C G T C T A G C T G A C T A G A C G T A C G T
A C G T A C G T A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

PB0187.1_Tcf7_2/Jaspar

Match Rank:4
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----TTAGAAACTTGAR
CCGTATTATAAACAA---
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T C G T A C T A G C G T A C T G A C G T A G T A C G C A T A C G T C T A G C T G A C T A G
G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A A C G T A C G T A C G T

PB0034.1_Irf4_1/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TTAGAAACTTGAR
CGTATCGAAACCAAA-
 A C G T A C G T A C G T A C G T A G C T C G T A C T A G C G T A C T G A C G T A G T A C G C A T A C G T C T A G C T G A C T A G
T G A C C T A G C G A T C G T A G A C T A G T C C T A G T C G A C G T A C G T A T A G C G A T C C T G A G T C A C G T A A C G T

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:6
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TTAGAAACTTGAR--
---GAAAGTGAAAGT
 A C G T A G C T C G T A C T A G C G T A C T G A C G T A G T A C G C A T A C G T C T A G C T G A C T A G A C G T A C G T
A C G T A C G T A C G T T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:TTAGAAACTTGAR--
---GAAACTGAAACT
 A C G T A G C T C G T A C T A G C G T A C T G A C G T A G T A C G C A T A C G T C T A G C T G A C T A G A C G T A C G T
A C G T A C G T A C G T T C A G C T G A G T C A C G T A A T G C G A C T A T C G G T C A C T G A C T G A T A G C G A C T

PB0194.1_Zbtb12_2/Jaspar

Match Rank:8
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----TTAGAAACTTGAR
TATCATTAGAACGCT---
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T C G T A C T A G C G T A C T G A C G T A G T A C G C A T A C G T C T A G C T G A C T A G
G C A T T G C A G A C T A T G C T C G A C G A T C A G T C T G A C A T G G C T A G T C A G T A C A C T G A G T C C G A T A C G T A C G T A C G T

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TTAGAAACTTGAR
GGTTAGAGACCT---
 A C G T A C G T A C G T A G C T C G T A C T A G C G T A C T G A C G T A G T A C G C A T A C G T C T A G C T G A C T A G
C T A G T A C G C G A T A C G T C G T A T C A G C T G A T C A G G T C A T G A C A G T C G A C T A C G T A C G T A C G T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TTAGAAACTTGAR
ACTGAAACCA---
 A C G T A G C T C G T A C T A G C G T A C T G A C G T A G T A C G C A T A C G T C T A G C T G A C T A G
G C T A T A G C A G C T A T C G G T C A C G T A G C T A A T G C G A T C C T G A A C G T A C G T A C G T