Information for 9-TGAAATATTT (Motif 12)

G C A T T A C G T C G A G C T A G C T A G C A T C G T A C G A T C G A T A G C T
Reverse Opposite:
T C G A G C T A G C T A G C A T C G T A C G A T C G A T A G C T A T G C C G T A
p-value:1e-6
log p-value:-1.399e+01
Information Content per bp:1.650
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif5.38%
Number of Background Sequences with motif1169.5
Percentage of Background Sequences with motif2.46%
Average Position of motif in Targets48.8 +/- 29.2bp
Average Position of motif in Background50.7 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---TGAAATATTT-
NNTNNCAATATTAG
 A C G T A C G T A C G T G C A T T A C G T C G A G C T A G C T A G C A T C G T A C G A T C G A T A G C T A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---TGAAATATTT-
NNTNNCAATATTAG
 A C G T A C G T A C G T G C A T T A C G T C G A G C T A G C T A G C A T C G T A C G A T C G A T A G C T A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

MF0010.1_Homeobox_class/Jaspar

Match Rank:3
Score:0.66
Offset:3
Orientation:forward strand
Alignment:TGAAATATTT
---AATAATT
 G C A T T A C G T C G A G C T A G C T A G C A T C G T A C G A T C G A T A G C T
A C G T A C G T A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T

PB0146.1_Mafk_2/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TGAAATATTT--
CCTTGCAATTTTTNN
 A C G T A C G T A C G T G C A T T A C G T C G A G C T A G C T A G C A T C G T A C G A T C G A T A G C T A C G T A C G T
A G T C T A G C C A G T A C G T C T A G G T A C C T G A G T C A C G A T C G A T G A C T G A C T A G C T C A G T A G T C

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGAAATATTT--
TGAATTATGCAT
 G C A T T A C G T C G A G C T A G C T A G C A T C G T A C G A T C G A T A G C T A C G T A C G T
C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T

POU4F1/MA0790.1/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TGAAATATTT--
CATTAATTATTCAT
 A C G T A C G T G C A T T A C G T C G A G C T A G C T A G C A T C G T A C G A T C G A T A G C T A C G T A C G T
G T A C C T G A A G C T G C A T G C T A G C T A G C A T G C A T C G T A C G A T C A G T G A T C C T G A A G C T

PH0020.1_Dlx1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGAAATATTT---
CTGAGGTAATTAAT
 A C G T G C A T T A C G T C G A G C T A G C T A G C A T C G T A C G A T C G A T A G C T A C G T A C G T A C G T
A G T C A G C T C T A G T G C A C T A G C T A G G A C T T C G A C G T A C G A T A C G T C T G A C G T A A G C T

FOXC1/MA0032.2/Jaspar

Match Rank:8
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:TGAAATATTT-----
----ATATTTACATA
 G C A T T A C G T C G A G C T A G C T A G C A T C G T A C G A T C G A T A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A G A C T T C G A G A C T C A G T C A G T C G T A A G T C G C T A G A C T C G T A

Sox11/MA0869.1/Jaspar

Match Rank:9
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----TGAAATATTT
AACACTGAAATTGTT
 A C G T A C G T A C G T A C G T A C G T G C A T T A C G T C G A G C T A G C T A G C A T C G T A C G A T C G A T A G C T
T C G A C G T A A G T C G T C A G T A C A C G T C T A G G T C A C T G A C G T A A C G T A C G T A C T G A C G T A C G T

PB0066.1_Sox17_1/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TGAAATATTT--
NNATNAATTGTTTNN
 A C G T A C G T A C G T G C A T T A C G T C G A G C T A G C T A G C A T C G T A C G A T C G A T A G C T A C G T A C G T
G C A T C T A G C G A T C G A T A G C T G C T A C G T A G C A T C G A T T C A G C G A T A C G T G A C T G C T A A C G T