Information for 8-GCCGACGGCG (Motif 11)

A T C G G T A C T G A C T C A G C T G A T G A C C A T G C A T G G T A C C T A G
Reverse Opposite:
G A T C C A T G G T A C G T A C A C T G G A C T A G T C A C T G C A T G T A G C
p-value:1e-6
log p-value:-1.463e+01
Information Content per bp:1.662
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif3.44%
Number of Background Sequences with motif567.8
Percentage of Background Sequences with motif1.19%
Average Position of motif in Targets51.1 +/- 26.8bp
Average Position of motif in Background48.2 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0131.1_Gmeb1_2/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GCCGACGGCG----
TGGGCGACGTCGTTAA
 A C G T A C G T A T C G G T A C T G A C T C A G C T G A T G A C C A T G C A T G G T A C C T A G A C G T A C G T A C G T A C G T
C A G T C A T G T C A G A C T G G T A C T C A G G C T A T A G C A C T G C A G T A G T C C A T G G A C T A G C T G T C A G C T A

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GCCGACGGCG--
ANTGCCTGAGGCAAN
 A C G T A C G T A C G T A T C G G T A C T G A C T C A G C T G A T G A C C A T G C A T G G T A C C T A G A C G T A C G T
C G T A C A G T G A C T C A T G G A T C G A T C C A G T T A C G T G C A C A T G C A T G A G T C C G T A G T C A G A C T

TFAP2A/MA0003.3/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCCGACGGCG
NGCCTGAGGCN
 A C G T A T C G G T A C T G A C T C A G C T G A T G A C C A T G C A T G G T A C C T A G
G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A T G

HINFP/MA0131.2/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GCCGACGGCG
NCGCGGACGTTG
 A C G T A C G T A T C G G T A C T G A C T C A G C T G A T G A C C A T G C A T G G T A C C T A G
T G A C G T A C T A C G T A G C C T A G A T C G C G T A T A G C T A C G A G C T A C G T T A C G

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCCGACGGCG
AGCCTCAGGCA
 A C G T A T C G G T A C T G A C T C A G C T G A T G A C C A T G C A T G G T A C C T A G
G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCCGACGGCG
NGCCTNAGGCN
 A C G T A T C G G T A C T G A C T C A G C T G A T G A C C A T G C A T G G T A C C T A G
G C A T A T C G A T G C A G T C A G C T A T C G T C G A T C A G A T C G A T G C C A G T

PB0179.1_Sp100_2/Jaspar

Match Rank:7
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------GCCGACGGCG
NNTTTANNCGACGNA-
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G G T A C T G A C T C A G C T G A T G A C C A T G C A T G G T A C C T A G
T A G C G C A T C G A T C G A T C G A T G T C A T G C A C A T G A G T C A C T G C G T A A G T C C T A G T A C G T C G A A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCCGACGGCG
CCAGACRSVB
 A T C G G T A C T G A C T C A G C T G A T G A C C A T G C A T G G T A C C T A G
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GCCGACGGCG--
ATTGCCTGAGGCAAT
 A C G T A C G T A C G T A T C G G T A C T G A C T C A G C T G A T G A C C A T G C A T G G T A C C T A G A C G T A C G T
G C T A G C A T G C A T A T C G A G T C A G T C A G C T A T C G T C G A T C A G A C T G T A G C C T A G G C T A C G A T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GCCGACGGCG
CCAGACAG--
 A T C G G T A C T G A C T C A G C T G A T G A C C A T G C A T G G T A C C T A G
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T