Information for 13-TGCCATGCGG (Motif 24)

A C G T A C T G A G T C A G T C C G T A C G A T A C T G G T A C A T C G A C T G
Reverse Opposite:
G T A C T A G C A C T G G T A C G C T A A C G T A C T G A C T G A G T C G T C A
p-value:1e-6
log p-value:-1.519e+01
Information Content per bp:1.855
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.40%
Number of Background Sequences with motif90.8
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets47.1 +/- 22.8bp
Average Position of motif in Background56.7 +/- 37.6bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0147.1_Max_2/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TGCCATGCGG---
GTGCCACGCGACTG
 A C G T A C G T A C T G A G T C A G T C C G T A C G A T A C T G G T A C A T C G A C T G A C G T A C G T A C G T
A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TGCCATGCGG
CGTGCCAAG---
 A C G T A C G T A C G T A C T G A G T C A G T C C G T A C G A T A C T G G T A C A T C G A C T G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TGCCATGCGG
TTGCCAAG---
 A C G T A C G T A C T G A G T C A G T C C G T A C G A T A C T G G T A C A T C G A C T G
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TGCCATGCGG
TGCCAA----
 A C G T A C T G A G T C A G T C C G T A C G A T A C T G G T A C A T C G A C T G
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TGCCATGCGG
GGTGCCAAGT--
 A C G T A C G T A C G T A C T G A G T C A G T C C G T A C G A T A C T G G T A C A T C G A C T G
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TGCCATGCGG
ATGCCAACC--
 A C G T A C G T A C T G A G T C A G T C C G T A C G A T A C T G G T A C A T C G A C T G
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----TGCCATGCGG--
ACTATGCCAACCTACC
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A C G A T A C T G G T A C A T C G A C T G A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

TFAP2B/MA0811.1/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TGCCATGCGG--
TGCCCTNGGGCA
 A C G T A C T G A G T C A G T C C G T A C G A T A C T G G T A C A T C G A C T G A C G T A C G T
G A C T T A C G A T G C A G T C A G T C A G C T T C A G T C A G C T A G A T C G A T G C C T G A

TFAP2C/MA0524.2/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGCCATGCGG--
TGCCCTNGGGCA
 A C G T A C T G A G T C A G T C C G T A C G A T A C T G G T A C A T C G A C T G A C G T A C G T
G A C T T A C G A T G C G A T C A G T C A G C T T C A G T C A G C T A G A T C G A T G C C T G A

PB0024.1_Gcm1_1/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGCCATGCGG------
NNNNATGCGGGTNNNN
 A C G T A C T G A G T C A G T C C G T A C G A T A C T G G T A C A T C G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
G T C A C T G A G C A T A C T G T C G A G A C T T C A G A T G C C A T G A C T G A C T G A G C T C G T A A G T C A C T G C G T A