Information for 12-CAAAGCSWKMAAA (Motif 15)

A G T C C G T A C G T A C G T A A C T G A G T C A T G C C G T A A C T G G T A C C G T A G T C A C G T A
Reverse Opposite:
A C G T A C G T A C G T A C T G G T A C C G A T A T C G C T A G A G T C A C G T A C G T A C G T A C T G
p-value:1e-10
log p-value:-2.438e+01
Information Content per bp:1.876
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif6.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets73.7 +/- 20.8bp
Average Position of motif in Background39.3 +/- 24.9bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0064.1_Hoxb9/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CAAAGCSWKMAAA----
-AGAGCCATAAAATTCG
 A G T C C G T A C G T A C G T A A C T G A G T C A T G C C G T A A C T G G T A C C G T A G T C A C G T A A C G T A C G T A C G T A C G T
A C G T T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

CDX2/MA0465.1/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CAAAGCSWKMAAA
--AAGCCATAAAA
 A G T C C G T A C G T A C G T A A C T G A G T C A T G C C G T A A C T G G T A C C G T A G T C A C G T A
A C G T A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CAAAGCSWKMAAA
ACATCAAAGG-------
 A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C T G A G T C A T G C C G T A A C T G G T A C C G T A G T C A C G T A
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:4
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CAAAGCSWKMAAA
VRRACAAWGG-------
 A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C T G A G T C A T G C C G T A A C T G G T A C C G T A G T C A C G T A
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CAAAGCSWKMAAA
ACAAAG--------
 A C G T A G T C C G T A C G T A C G T A A C T G A G T C A T G C C G T A A C T G G T A C C G T A G T C A C G T A
G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TCF7L2/MA0523.1/Jaspar

Match Rank:6
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------CAAAGCSWKMAAA
AAAGATCAAAGGAA-----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C T G A G T C A T G C C G T A A C T G G T A C C G T A G T C A C G T A
C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A A C G T A C G T A C G T A C G T A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CAAAGCSWKMAAA-----
-ACGGCCATAAAATTAAT
 A G T C C G T A C G T A C G T A A C T G A G T C A T G C C G T A A C T G G T A C C G T A G T C A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:8
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CAAAGCSWKMAAA
GGAACAAAGR-------
 A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C T G A G T C A T G C C G T A A C T G G T A C C G T A G T C A C G T A
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:9
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CAAAGCSWKMAAA
ACATCAAAGGNA-----
 A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C T G A G T C A T G C C G T A A C T G G T A C C G T A G T C A C G T A
C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A A C G T A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:10
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CAAAGCSWKMAAA-
----GTCATAAAAN
 A G T C C G T A C G T A C G T A A C T G A G T C A T G C C G T A A C T G G T A C C G T A G T C A C G T A A C G T
A C G T A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T