Information for 8-CTCTTAAATCCAA (Motif 11)

G T A C A G C T G T A C C A G T A C G T C G T A C T G A C G T A G A C T A G T C G T A C T C G A C G T A
Reverse Opposite:
C G A T A G C T A C T G A C T G C T G A A C G T A G C T G A C T G T C A G T C A A C T G C T G A A C T G
p-value:1e-15
log p-value:-3.621e+01
Information Content per bp:1.779
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.25%
Number of Background Sequences with motif7.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets36.1 +/- 24.0bp
Average Position of motif in Background44.0 +/- 18.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa9/MA0594.1/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTCTTAAATCCAA
GCCATAAATCA--
 G T A C A G C T G T A C C A G T A C G T C G T A C T G A C G T A G A C T A G T C G T A C T C G A C G T A
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:2
Score:0.63
Offset:4
Orientation:forward strand
Alignment:CTCTTAAATCCAA-
----CAAATCACTG
 G T A C A G C T G T A C C A G T A C G T C G T A C T G A C G T A G A C T A G T C G T A C T C G A C G T A A C G T
A C G T A C G T A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CTCTTAAATCCAA
GGCCATAAATCA--
 A C G T G T A C A G C T G T A C C A G T A C G T C G T A C T G A C G T A G A C T A G T C G T A C T C G A C G T A
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T A C G T

HOXC13/MA0907.1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTCTTAAATCCAA
GCTCGTAAAAA---
 A C G T G T A C A G C T G T A C C A G T A C G T C G T A C T G A C G T A G A C T A G T C G T A C T C G A C G T A
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A A C G T A C G T A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTCTTAAATCCAA
GGCCATAAATCAC-
 A C G T G T A C A G C T G T A C C A G T A C G T C G T A C T G A C G T A G A C T A G T C G T A C T C G A C G T A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTCTTAAATCCAA
NGYCATAAAWCH--
 A C G T G T A C A G C T G T A C C A G T A C G T C G T A C T G A C G T A G A C T A G T C G T A C T C G A C G T A
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTCTTAAATCCAA
GGCCATAAATCA--
 A C G T G T A C A G C T G T A C C A G T A C G T C G T A C T G A C G T A G A C T A G T C G T A C T C G A C G T A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:8
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CTCTTAAATCCAA
---HNRAATCAAT
 G T A C A G C T G T A C C A G T A C G T C G T A C T G A C G T A G A C T A G T C G T A C T C G A C G T A
A C G T A C G T A C G T G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T

PH0068.1_Hoxc13/Jaspar

Match Rank:9
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CTCTTAAATCCAA
AAAGCTCGTAAAATTT-
 A C G T A C G T A C G T A C G T G T A C A G C T G T A C C A G T A C G T C G T A C T G A C G T A G A C T A G T C G T A C T C G A C G T A
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CTCTTAAATCCAA
AAACCTCGTAAAATTT-
 A C G T A C G T A C G T A C G T G T A C A G C T G T A C C A G T A C G T C G T A C T G A C G T A G A C T A G T C G T A C T C G A C G T A
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T A C G T