Information for 8-TGTYATTCACATT (Motif 19)

A C G T C A T G C G A T A G T C C G T A C G A T A C G T A T G C G T C A G A T C C G T A C G A T C G A T
Reverse Opposite:
C G T A C G T A A C G T C A T G A C G T A T C G G T C A C G T A A C G T C T A G C G T A G T A C C G T A
p-value:1e-11
log p-value:-2.673e+01
Information Content per bp:1.817
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.0 +/- 19.9bp
Average Position of motif in Background58.0 +/- 24.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---TGTYATTCACATT
CTTTGTTATGCAAAT-
 A C G T A C G T A C G T A C G T C A T G C G A T A G T C C G T A C G A T A C G T A T G C G T C A G A T C C G T A C G A T C G A T
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TGTYATTCACATT
CATTGTTATGCAAAT-
 A C G T A C G T A C G T A C G T C A T G C G A T A G T C C G T A C G A T A C G T A T G C G T C A G A T C C G T A C G A T C G A T
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TGTYATTCACATT
NCTGTCAATCAN---
 A C G T A C G T A C G T C A T G C G A T A G T C C G T A C G A T A C G T A T G C G T C A G A T C C G T A C G A T C G A T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:4
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TGTYATTCACATT
SCTGTCAVTCAV---
 A C G T A C G T A C G T C A T G C G A T A G T C C G T A C G A T A C G T A T G C G T C A G A T C C G T A C G A T C G A T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:5
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TGTYATTCACATT
GSCTGTCACTCA----
 A C G T A C G T A C G T A C G T C A T G C G A T A G T C C G T A C G A T A C G T A T G C G T C A G A T C C G T A C G A T C G A T
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TGTYATTCACATT---
TTGTATGCAAATTAGA
 A C G T C A T G C G A T A G T C C G T A C G A T A C G T A T G C G T C A G A T C C G T A C G A T C G A T A C G T A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TGTYATTCACATT---
TTGTATGCAAATTAGA
 A C G T C A T G C G A T A G T C C G T A C G A T A C G T A T G C G T C A G A T C C G T A C G A T C G A T A C G T A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0144.1_Pou2f2/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TGTYATTCACATT---
TTGTATGCAAATTAGA
 A C G T C A T G C G A T A G T C C G T A C G A T A C G T A T G C G T C A G A T C C G T A C G A T C G A T A C G T A C G T A C G T
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

POU3F1/MA0786.1/Jaspar

Match Rank:9
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TGTYATTCACATT-
--TTATGCAAATTA
 A C G T C A T G C G A T A G T C C G T A C G A T A C G T A T G C G T C A G A T C C G T A C G A T C G A T A C G T
A C G T A C G T C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TGTYATTCACATT
-CTCATTTGCATW
 A C G T C A T G C G A T A G T C C G T A C G A T A C G T A T G C G T C A G A T C C G T A C G A T C G A T
A C G T A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A