Information for 5-GARAGASRARGGARAM (Motif 20)

C T A G C G T A C T G A C G T A A C T G C G T A T A C G C T G A C G T A C T A G C T A G C T A G C G T A C T G A C G T A G T C A
Reverse Opposite:
A C G T A C G T A G C T C G A T A G T C A G T C A G T C A C G T A G C T A T G C A C G T A G T C A C G T G A C T A C G T A G T C
p-value:1e-9
log p-value:-2.184e+01
Information Content per bp:1.837
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets35.1 +/- 19.2bp
Average Position of motif in Background48.1 +/- 19.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GARAGASRARGGARAM
AAACAGACAAAGGAAT-
 A C G T C T A G C G T A C T G A C G T A A C T G C G T A T A C G C T G A C G T A C T A G C T A G C T A G C G T A C T G A C G T A G T C A
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T

IRF2/MA0051.1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GARAGASRARGGARAM-
GGAAAGCGAAACCAAAAC
 A C G T C T A G C G T A C T G A C G T A A C T G C G T A T A C G C T G A C G T A C T A G C T A G C T A G C G T A C T G A C G T A G T C A A C G T
A T C G C T A G C G T A C G T A C G T A C T A G A G C T A C T G C G T A C G T A C G T A A T C G A G T C C T G A C G T A C G T A G C T A G T A C

PB0033.1_Irf3_1/Jaspar

Match Rank:3
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GARAGASRARGGARAM--
----GAGAACCGAAACTG
 C T A G C G T A C T G A C G T A A C T G C G T A T A C G C T G A C G T A C T A G C T A G C T A G C G T A C T G A C G T A G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C T G C T G A C T A G C G T A G C T A G T A C T A G C C T A G T C G A G C T A G C T A A T G C G A C T C T A G

IRF1/MA0050.2/Jaspar

Match Rank:4
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----GARAGASRARGGARAM
AAANNGAAAGTGAAAGTAAAN
 A C G T A C G T A C G T A C G T A C G T C T A G C G T A C T G A C G T A A C T G C G T A T A C G C T G A C G T A C T A G C T A G C T A G C G T A C T G A C G T A G T C A
C T G A C G T A C T G A T C A G G C A T T C A G C T G A C T G A C G T A T A C G G A C T C T A G T C G A C T G A C G T A T A C G G A C T T C G A T C G A C T G A C T G A

SPIC/MA0687.1/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GARAGASRARGGARAM
AAAAAGAGGAAGTA---
 A C G T C T A G C G T A C T G A C G T A A C T G C G T A T A C G C T G A C G T A C T A G C T A G C T A G C G T A C T G A C G T A G T C A
G T C A C T G A G T C A G T C A C G T A T A C G T G C A A T C G C A T G G C T A T G C A C T A G G C A T G T C A A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GARAGASRARGGARAM
--AAAACAAAGG----
 C T A G C G T A C T G A C G T A A C T G C G T A T A C G C T G A C G T A C T A G C T A G C T A G C G T A C T G A C G T A G T C A
A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

PRDM1/MA0508.1/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GARAGASRARGGARAM
AGAAAGTGAAAGTGA--
 A C G T C T A G C G T A C T G A C G T A A C T G C G T A T A C G C T G A C G T A C T A G C T A G C T A G C G T A C T G A C G T A G T C A
C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A A C G T A C G T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GARAGASRARGGARAM
GAAAGTGAAAGT----
 C T A G C G T A C T G A C G T A A C T G C G T A T A C G C T G A C G T A C T A G C T A G C T A G C G T A C T G A C G T A G T C A
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T A C G T A C G T

NFATC3/MA0625.1/Jaspar

Match Rank:9
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:GARAGASRARGGARAM-
-------AATGGAAAAT
 C T A G C G T A C T G A C G T A A C T G C G T A T A C G C T G A C G T A C T A G C T A G C T A G C G T A C T G A C G T A G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T G A G A C T T A C G C A T G T C G A C G T A G C T A C T G A G C A T

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GARAGASRARGGARAM
GAAAGTGAAAGT----
 C T A G C G T A C T G A C G T A A C T G C G T A T A C G C T G A C G T A C T A G C T A G C T A G C G T A C T G A C G T A G T C A
T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T A C G T A C G T A C G T A C G T