Information for 6-GTCCCTGGGGTCACTC (Motif 19)

A C T G A C G T A T G C A G T C A G T C A C G T A C T G C A T G A C T G A T C G A C G T A G T C C G T A A G T C A C G T A G T C
Reverse Opposite:
C T A G G T C A C T A G A C G T A C T G C G T A A T G C A G T C G A T C A G T C C G T A A C T G A C T G A T C G G T C A A G T C
p-value:1e-9
log p-value:-2.120e+01
Information Content per bp:1.914
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets37.0 +/- 23.7bp
Average Position of motif in Background38.8 +/- 15.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GTCCCTGGGGTCACTC
NGTCCCNNGGGA-----
 A C G T A C T G A C G T A T G C A G T C A G T C A C G T A C T G C A T G A C T G A T C G A C G T A G T C C G T A A G T C A C G T A G T C
C T A G A T C G G A C T A G T C A G T C A G T C G A C T C T G A A C T G C T A G A C T G C T G A A C G T A C G T A C G T A C G T A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GTCCCTGGGGTCACTC--
-NTNNNGGGGTCANGNNN
 A C T G A C G T A T G C A G T C A G T C A C G T A C T G C A T G A C T G A T C G A C G T A G T C C G T A A G T C A C G T A G T C A C G T A C G T
A C G T T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

PB0030.1_Hnf4a_1/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GTCCCTGGGGTCACTC--
-CTCCAGGGGTCAATTGA
 A C T G A C G T A T G C A G T C A G T C A C G T A C T G C A T G A C T G A T C G A C G T A G T C C G T A A G T C A C G T A G T C A C G T A C G T
A C G T A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GTCCCTGGGGTCACTC
TCCCCTGGGGAC----
 A C T G A C G T A T G C A G T C A G T C A C G T A C T G C A T G A C T G A T C G A C G T A G T C C G T A A G T C A C G T A G T C
A G C T A G T C A G T C G A T C G A T C C G A T C T A G C T A G C T A G T C A G T G C A G T A C A C G T A C G T A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GTCCCTGGGGTCACTC-
-CGCGCCGGGTCACGTA
 A C T G A C G T A T G C A G T C A G T C A C G T A C T G C A T G A C T G A T C G A C G T A G T C C G T A A G T C A C G T A G T C A C G T
A C G T T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.61
Offset:5
Orientation:forward strand
Alignment:GTCCCTGGGGTCACTC
-----AGRGGTCA---
 A C T G A C G T A T G C A G T C A G T C A C G T A C T G C A T G A C T G A T C G A C G T A G T C C G T A A G T C A C G T A G T C
A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T

EBF1/MA0154.3/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GTCCCTGGGGTCACTC
ANTCCCTNGGGAAT---
 A C G T A C T G A C G T A T G C A G T C A G T C A C G T A C T G C A T G A C T G A T C G A C G T A G T C C G T A A G T C A C G T A G T C
C T G A C A G T G A C T G T A C A G T C A G T C G C A T C G A T C T A G T C A G T A C G C T G A T G C A G A C T A C G T A C G T A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GTCCCTGGGGTCACTC--
-GGCGAGGGGTCAAGGGC
 A C T G A C G T A T G C A G T C A G T C A C G T A C T G C A T G A C T G A T C G A C G T A G T C C G T A A G T C A C G T A G T C A C G T A C G T
A C G T T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.58
Offset:5
Orientation:forward strand
Alignment:GTCCCTGGGGTCACTC
-----TRAGGTCA---
 A C T G A C G T A T G C A G T C A G T C A C G T A C T G C A T G A C T G A T C G A C G T A G T C C G T A A G T C A C G T A G T C
A C G T A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.58
Offset:7
Orientation:forward strand
Alignment:GTCCCTGGGGTCACTC
-------AGGTCA---
 A C T G A C G T A T G C A G T C A G T C A C G T A C T G C A T G A C T G A T C G A C G T A G T C C G T A A G T C A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T