Information for 5-TAATTAMCCC (Motif 4)

G C A T G T C A G T C A G C A T A C G T G C T A G T C A A G T C G A T C G A T C
Reverse Opposite:
C T A G C T A G C T A G C A G T C G A T T G C A C G T A C A G T C A G T C G T A
p-value:1e-14
log p-value:-3.256e+01
Information Content per bp:1.620
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif4.90%
Number of Background Sequences with motif451.7
Percentage of Background Sequences with motif0.97%
Average Position of motif in Targets47.9 +/- 25.8bp
Average Position of motif in Background49.3 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0072.1_Hoxc8/Jaspar

Match Rank:1
Score:0.79
Offset:-4
Orientation:reverse strand
Alignment:----TAATTAMCCC--
ACNNTAATTACNNCAN
 A C G T A C G T A C G T A C G T G C A T G T C A G T C A G C A T A C G T G C T A G T C A A G T C G A T C G A T C A C G T A C G T
T G C A G T A C C T A G C A G T G A C T G T C A G C T A C A G T C A G T C T G A G T A C A G T C G A T C G T A C C G T A T G C A

PB0031.1_Hoxa3_1/Jaspar

Match Rank:2
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--TAATTAMCCC--
GTTAATTANCTCNN
 A C G T A C G T G C A T G T C A G T C A G C A T A C G T G C T A G T C A A G T C G A T C G A T C A C G T A C G T
T C A G A G C T A G C T G T C A C G T A A C G T A C G T C T G A T A G C G A T C C G A T T A G C T G A C G C T A

PH0020.1_Dlx1/Jaspar

Match Rank:3
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--TAATTAMCCC--
ATTAATTANCTCAN
 A C G T A C G T G C A T G T C A G T C A G C A T A C G T G C T A G T C A A G T C G A T C G A T C A C G T A C G T
T C G A G A C T G A C T T C G A C G T A C G A T A C G T C T G A G A T C G A T C A C G T A G T C C T G A T A C G

PH0174.1_Vax1/Jaspar

Match Rank:4
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----TAATTAMCCC--
ACGTTAATTAACCCAG
 A C G T A C G T A C G T A C G T G C A T G T C A G T C A G C A T A C G T G C T A G T C A A G T C G A T C G A T C A C G T A C G T
T G C A T A G C T C A G C G A T G A C T G T C A G C T A C G A T C A G T C T G A T C G A A G T C G A T C G A T C C G T A C T A G

Hoxd3/MA0912.1/Jaspar

Match Rank:5
Score:0.78
Offset:-4
Orientation:reverse strand
Alignment:----TAATTAMCCC--
ANGNTAATTANCNCAN
 A C G T A C G T A C G T A C G T G C A T G T C A G T C A G C A T A C G T G C T A G T C A A G T C G A T C G A T C A C G T A C G T
T C G A T A C G C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G C A G A T C G A C T G T A C C G T A C T G A

PH0079.1_Hoxd3/Jaspar

Match Rank:6
Score:0.78
Offset:-4
Orientation:reverse strand
Alignment:----TAATTAMCCC--
ANGNTAATTANCNCAN
 A C G T A C G T A C G T A C G T G C A T G T C A G T C A G C A T A C G T G C T A G T C A A G T C G A T C G A T C A C G T A C G T
T C G A T A C G C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G C A G A T C G A C T G T A C C G T A C T G A

PH0050.1_Hoxa3/Jaspar

Match Rank:7
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--TAATTAMCCC--
ACTAATTANCNCNA
 A C G T A C G T G C A T G T C A G T C A G C A T A C G T G C T A G T C A A G T C G A T C G A T C A C G T A C G T
T C G A A G T C G A C T G T C A C G T A A C G T A C G T C T G A T A G C A G T C C A G T A G T C T C G A G T C A

PH0036.1_Gsx2/Jaspar

Match Rank:8
Score:0.77
Offset:-6
Orientation:reverse strand
Alignment:------TAATTAMCCC
NTNNGCTAATTANCNT
 A C G T A C G T A C G T A C G T A C G T A C G T G C A T G T C A G T C A G C A T A C G T G C T A G T C A A G T C G A T C G A T C
G T C A G A C T T A G C T C G A C T A G A G T C G A C T G T C A C G T A C G A T A C G T C T G A T C G A G A T C A T G C A G C T

MEOX1/MA0661.1/Jaspar

Match Rank:9
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--TAATTAMCCC
GCTAATTAAC--
 A C G T A C G T G C A T G T C A G T C A G C A T A C G T G C T A G T C A A G T C G A T C G A T C
T C A G T A G C G A C T T G C A C G T A G A C T A C G T C T G A G T C A T A G C A C G T A C G T

PH0053.1_Hoxa6/Jaspar

Match Rank:10
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----TAATTAMCCC--
AAGGTAATTACCTAAT
 A C G T A C G T A C G T A C G T G C A T G T C A G T C A G C A T A C G T G C T A G T C A A G T C G A T C G A T C A C G T A C G T
T C G A G T C A C T A G C A T G G A C T G T C A G C T A C A G T C A G T C T G A T G A C G A T C G A C T G T C A C G T A C A G T