Information for 25-GAGTGSCCCCTGSAGG (Motif 35)

A T C G C T G A T C A G A C G T C A T G A T C G A G T C A G T C G T A C A G T C A C G T T A C G A T G C C G T A A C T G A C T G
Reverse Opposite:
T G A C A G T C G C A T T A C G A T G C C G T A C T A G C A T G C T A G T C A G T A G C G T A C T G C A A G T C G A C T A T G C
p-value:1e-5
log p-value:-1.159e+01
Information Content per bp:1.618
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.50%
Number of Background Sequences with motif129.8
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets55.4 +/- 23.6bp
Average Position of motif in Background50.4 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---GAGTGSCCCCTGSAGG-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A T C G C T G A T C A G A C G T C A T G A T C G A G T C A G T C G T A C A G T C A C G T T A C G A T G C C G T A A C T G A C T G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GAGTGSCCCCTGSAGG---
TAGCGCCCCCTGGTGGCCA
 A T C G C T G A T C A G A C G T C A T G A T C G A G T C A G T C G T A C A G T C A C G T T A C G A T G C C G T A A C T G A C T G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GAGTGSCCCCTGSAGG---
ANAGTGCCACCTGGTGGCCA
 A C G T A T C G C T G A T C A G A C G T C A T G A T C G A G T C A G T C G T A C A G T C A C G T T A C G A T G C C G T A A C T G A C T G A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.66
Offset:3
Orientation:forward strand
Alignment:GAGTGSCCCCTGSAGG--
---GGCCYCCTGCTGDGH
 A T C G C T G A T C A G A C G T C A T G A T C G A G T C A G T C G T A C A G T C A C G T T A C G A T G C C G T A A C T G A C T G A C G T A C G T
A C G T A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:GAGTGSCCCCTGSAGG-
-----CCCCCTGCTGTG
 A T C G C T G A T C A G A C G T C A T G A T C G A G T C A G T C G T A C A G T C A C G T T A C G A T G C C G T A A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

PB0091.1_Zbtb3_1/Jaspar

Match Rank:6
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GAGTGSCCCCTGSAGG---
--AATCGCACTGCATTCCG
 A T C G C T G A T C A G A C G T C A T G A T C G A G T C A G T C G T A C A G T C A C G T T A C G A T G C C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GAGTGSCCCCTGSAGG
-----NSCACTYVAV-
 A T C G C T G A T C A G A C G T C A T G A T C G A G T C A G T C G T A C A G T C A C G T T A C G A T G C C G T A A C T G A C T G
A C G T A C G T A C G T A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:8
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GAGTGSCCCCTGSAGG--
---GACCCCCCGCTGTGC
 A T C G C T G A T C A G A C G T C A T G A T C G A G T C A G T C G T A C A G T C A C G T T A C G A T G C C G T A A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:9
Score:0.58
Offset:5
Orientation:forward strand
Alignment:GAGTGSCCCCTGSAGG
-----RSCACTYRAG-
 A T C G C T G A T C A G A C G T C A T G A T C G A G T C A G T C G T A C A G T C A C G T T A C G A T G C C G T A A C T G A C T G
A C G T A C G T A C G T A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:10
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GAGTGSCCCCTGSAGG-
---GACCCCCCGCTGTG
 A T C G C T G A T C A G A C G T C A T G A T C G A G T C A G T C G T A C A G T C A C G T T A C G A T G C C G T A A C T G A C T G A C G T
A C G T A C G T A C G T A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G