Information for 8-GAGGTSACACCRCAAG (Motif 3)

A C T G G T C A A C T G A C T G A C G T A T G C C T G A T G A C T C G A A G T C G T A C C T G A A T G C G T C A G C T A C T A G
Reverse Opposite:
A G T C C A G T A C G T A T C G A G C T A C T G A C T G A G C T A C T G A G C T A T C G C G T A G T A C G T A C A C G T A G T C
p-value:1e-15
log p-value:-3.578e+01
Information Content per bp:1.701
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.90%
Number of Background Sequences with motif31.5
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets59.1 +/- 27.1bp
Average Position of motif in Background50.9 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GAGGTSACACCRCAAG
-CNGTCACGCCAC---
 A C T G G T C A A C T G A C T G A C G T A T G C C T G A T G A C T C G A A G T C G T A C C T G A A T G C G T C A G C T A C T A G
A C G T G T A C C T A G T C A G A G C T T A G C C G T A A T G C T A C G A G T C G T A C G T C A A G T C A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GAGGTSACACCRCAAG
AGRGGTCA---------
 A C G T A C T G G T C A A C T G A C T G A C G T A T G C C T G A T G A C T C G A A G T C G T A C C T G A A T G C G T C A G C T A C T A G
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GAGGTSACACCRCAAG
TRAGGTCA---------
 A C G T A C T G G T C A A C T G A C T G A C G T A T G C C T G A T G A C T C G A A G T C G T A C C T G A A T G C G T C A G C T A C T A G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GAGGTSACACCRCAAG
AAGGTCAC--------
 A C T G G T C A A C T G A C T G A C G T A T G C C T G A T G A C T C G A A G T C G T A C C T G A A T G C G T C A G C T A C T A G
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:5
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----GAGGTSACACCRCAAG
NTNNNGGGGTCANGNNN----
 A C G T A C G T A C G T A C G T A C G T A C T G G T C A A C T G A C T G A C G T A T G C C T G A T G A C T C G A A G T C G T A C C T G A A T G C G T C A G C T A C T A G
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A A C G T A C G T A C G T A C G T

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GAGGTSACACCRCAAG
---ATCACCCCAT---
 A C T G G T C A A C T G A C T G A C G T A T G C C T G A T G A C T C G A A G T C G T A C C T G A A T G C G T C A G C T A C T A G
A C G T A C G T A C G T T C G A G C A T A T G C C T G A A T G C T A G C A G T C G T A C T C G A A G C T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GAGGTSACACCRCAAG
-AGGTCA---------
 A C T G G T C A A C T G A C T G A C G T A T G C C T G A T G A C T C G A A G T C G T A C C T G A A T G C G T C A G C T A C T A G
A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAGGTSACACCRCAAG
GAGGTCAAAGGTCA--
 A C T G G T C A A C T G A C T G A C G T A T G C C T G A T G A C T C G A A G T C G T A C C T G A A T G C G T C A G C T A C T A G
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A A C G T A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:9
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----GAGGTSACACCRCAAG
GGCGAGGGGTCAAGGGC----
 A C G T A C G T A C G T A C G T A C G T A C T G G T C A A C T G A C T G A C G T A T G C C T G A T G A C T C G A A G T C G T A C C T G A A T G C G T C A G C T A C T A G
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:10
Score:0.54
Offset:5
Orientation:forward strand
Alignment:GAGGTSACACCRCAAG-
-----NWAACCACADNN
 A C T G G T C A A C T G A C T G A C G T A T G C C T G A T G A C T C G A A G T C G T A C C T G A A T G C G T C A G C T A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C