Information for 12-CCAAATCAAT (Motif 26)

A G T C A G T C C G T A C G T A C G T A A C G T A G T C C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T A C T G C G T A A C G T A C G T C G A T A C T G A C T G
p-value:1e-6
log p-value:-1.543e+01
Information Content per bp:1.957
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets18.8 +/- 15.2bp
Average Position of motif in Background31.0 +/- 17.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:1
Score:0.83
Offset:0
Orientation:forward strand
Alignment:CCAAATCAAT
HNRAATCAAT
 A G T C A G T C C G T A C G T A C G T A A C G T A G T C C G T A C G T A A C G T
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:2
Score:0.78
Offset:2
Orientation:forward strand
Alignment:CCAAATCAAT--
--TAATCAATTA
 A G T C A G T C C G T A C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A

PH0026.1_Duxbl/Jaspar

Match Rank:3
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---CCAAATCAAT----
CGACCCAATCAACGGTG
 A C G T A C G T A C G T A G T C A G T C C G T A C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

CUX1/MA0754.1/Jaspar

Match Rank:4
Score:0.74
Offset:2
Orientation:forward strand
Alignment:CCAAATCAAT--
--TAATCGATAA
 A G T C A G T C C G T A C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T G A C T C T G A C T G A A G C T A G T C T C A G C G T A G C A T T G C A G T C A

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:5
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:CCAAATCAAT--
--DGATCRATAN
 A G T C A G T C C G T A C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T C T A G C T A G C T G A A C G T A G T C C T A G C G T A A C G T G T C A G A T C

Gfi1/MA0038.1/Jaspar

Match Rank:6
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CCAAATCAAT-
-CAAATCACTG
 A G T C A G T C C G T A C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T
A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

CUX2/MA0755.1/Jaspar

Match Rank:7
Score:0.72
Offset:2
Orientation:forward strand
Alignment:CCAAATCAAT--
--TAATCGATAA
 A G T C A G T C C G T A C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T G C A T C T G A C T G A A G C T A G T C C T A G C G T A G C A T G C T A G C T A

ONECUT3/MA0757.1/Jaspar

Match Rank:8
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CCAAATCAAT---
AAAAAATCAATAAT
 A C G T A G T C A G T C C G T A C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T
T C G A C T G A C G T A G C T A C T G A C T G A G A C T G T A C T C G A C G T A C G A T C G T A G C T A G C A T

ONECUT1/MA0679.1/Jaspar

Match Rank:9
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CCAAATCAAT---
AAAAAATCGATAAT
 A C G T A G T C A G T C C G T A C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T
T G C A C T G A C G T A G C T A C T G A C T G A A C G T A G T C C T A G C G T A G A C T C G T A G C T A G A C T

ONECUT2/MA0756.1/Jaspar

Match Rank:10
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CCAAATCAAT---
AAAAAATCGATAAT
 A C G T A G T C A G T C C G T A C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T
T C G A C T G A C G T A G C T A C T G A C T G A A C G T G T A C T C A G G C T A G C A T C G T A G C T A G C A T