Information for 13-GGCTGCCTTCAATTCA (Motif 13)

C T A G A T C G A G T C A C G T A C T G A G T C A G T C C G A T G A C T G T A C C G T A C G T A A C G T A G C T G T A C T C G A
Reverse Opposite:
A G C T A C T G C T G A G T C A A C G T A C G T A C T G C T G A C G T A A C T G A C T G A G T C C G T A A C T G A T G C A G T C
p-value:1e-11
log p-value:-2.556e+01
Information Content per bp:1.831
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.0 +/- 16.1bp
Average Position of motif in Background47.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GGCTGCCTTCAATTCA
--CTGCCCGCA-----
 C T A G A T C G A G T C A C G T A C T G A G T C A G T C C G A T G A C T G T A C C G T A C G T A A C G T A G C T G T A C T C G A
A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GGCTGCCTTCAATTCA
NNACTTGCCTT-------
 A C G T A C G T C T A G A T C G A G T C A C G T A C T G A G T C A G T C C G A T G A C T G T A C C G T A C G T A A C G T A G C T G T A C T C G A
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer

Match Rank:3
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--GGCTGCCTTCAATTCA
ACATCTGGWWTYAATTAR
 A C G T A C G T C T A G A T C G A G T C A C G T A C T G A G T C A G T C C G A T G A C T G T A C C G T A C G T A A C G T A G C T G T A C T C G A
T G C A G T A C C G T A A C G T T G A C C G A T A C T G A C T G C G A T C G A T G C A T A G C T G C T A C T G A A C G T G A C T G C T A C T G A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-GGCTGCCTTCAATTCA
TGGCAGNCTGCCAG---
 A C G T C T A G A T C G A G T C A C G T A C T G A G T C A G T C C G A T G A C T G T A C C G T A C G T A A C G T A G C T G T A C T C G A
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:5
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:GGCTGCCTTCAATTCA
ATTTGCATACAATGG-
 C T A G A T C G A G T C A C G T A C T G A G T C A G T C C G A T G A C T G T A C C G T A C G T A A C G T A G C T G T A C T C G A
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G A C G T

Myod1/MA0499.1/Jaspar

Match Rank:6
Score:0.49
Offset:-3
Orientation:forward strand
Alignment:---GGCTGCCTTCAATTCA
TGCAGCTGTCCCT------
 A C G T A C G T A C G T C T A G A T C G A G T C A C G T A C T G A G T C A G T C C G A T G A C T G T A C C G T A C G T A A C G T A G C T G T A C T C G A
G C A T T A C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C T A G C A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.49
Offset:1
Orientation:forward strand
Alignment:GGCTGCCTTCAATTCA
-GCTGTG---------
 C T A G A T C G A G T C A C G T A C T G A G T C A G T C C G A T G A C T G T A C C G T A C G T A A C G T A G C T G T A C T C G A
A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MSX2/MA0708.1/Jaspar

Match Rank:8
Score:0.49
Offset:8
Orientation:forward strand
Alignment:GGCTGCCTTCAATTCA
--------CCAATTAA
 C T A G A T C G A G T C A C G T A C T G A G T C A G T C C G A T G A C T G T A C C G T A C G T A A C G T A G C T G T A C T C G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A

ALX3/MA0634.1/Jaspar

Match Rank:9
Score:0.49
Offset:7
Orientation:forward strand
Alignment:GGCTGCCTTCAATTCA-
-------TCTAATTAAA
 C T A G A T C G A G T C A C G T A C T G A G T C A G T C C G A T G A C T G T A C C G T A C G T A A C G T A G C T G T A C T C G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T A G T C G A C T C T G A G T C A G C A T G A C T G C T A T C G A T G C A

POL008.1_DCE_S_I/Jaspar

Match Rank:10
Score:0.49
Offset:1
Orientation:forward strand
Alignment:GGCTGCCTTCAATTCA
-GCTTCC---------
 C T A G A T C G A G T C A C G T A C T G A G T C A G T C C G A T G A C T G T A C C G T A C G T A A C G T A G C T G T A C T C G A
A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T