Information for 1-CSTGACCTYT (Motif 1)

A G T C A T C G A G C T T A C G T G C A G A T C A G T C G A C T A G C T A G C T
Reverse Opposite:
T C G A T C G A C T G A C T A G C T A G A C G T A T G C T C G A T A G C T C A G
p-value:1e-141
log p-value:-3.267e+02
Information Content per bp:1.645
Number of Target Sequences with motif346.0
Percentage of Target Sequences with motif47.07%
Number of Background Sequences with motif4757.1
Percentage of Background Sequences with motif10.21%
Average Position of motif in Targets51.6 +/- 24.9bp
Average Position of motif in Background50.0 +/- 33.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:1
Score:0.96
Offset:2
Orientation:reverse strand
Alignment:CSTGACCTYT
--TGACCYCT
 A G T C A T C G A G C T T A C G T G C A G A T C A G T C G A C T A G C T A G C T
A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:2
Score:0.95
Offset:-2
Orientation:reverse strand
Alignment:--CSTGACCTYT----
NNNNTGACCTTTNNNN
 A C G T A C G T A G T C A T C G A G C T T A C G T G C A G A T C A G T C G A C T A G C T A G C T A C G T A C G T A C G T A C G T
A G T C C G A T A T G C C A T G A G C T T C A G G T C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A C A T G G T C A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.94
Offset:2
Orientation:reverse strand
Alignment:CSTGACCTYT
--TGACCT--
 A G T C A T C G A G C T T A C G T G C A G A T C A G T C G A C T A G C T A G C T
A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:4
Score:0.94
Offset:-2
Orientation:reverse strand
Alignment:--CSTGACCTYT-
CNNTTGACCTTTG
 A C G T A C G T A G T C A T C G A G C T T A C G T G C A G A T C A G T C G A C T A G C T A G C T A C G T
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.93
Offset:2
Orientation:reverse strand
Alignment:CSTGACCTYT
--TGACCTYA
 A G T C A T C G A G C T T A C G T G C A G A T C A G T C G A C T A G C T A G C T
A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

PB0053.1_Rara_1/Jaspar

Match Rank:6
Score:0.93
Offset:-2
Orientation:reverse strand
Alignment:--CSTGACCTYT----
NNNGTGACCTTTGNNN
 A C G T A C G T A G T C A T C G A G C T T A C G T G C A G A T C A G T C G A C T A G C T A G C T A C G T A C G T A C G T A C G T
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A

NR4A2/MA0160.1/Jaspar

Match Rank:7
Score:0.91
Offset:1
Orientation:reverse strand
Alignment:CSTGACCTYT
-GTGACCTT-
 A G T C A T C G A G C T T A C G T G C A G A T C A G T C G A C T A G C T A G C T
A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.89
Offset:2
Orientation:reverse strand
Alignment:CSTGACCTYT--
--TGACCTTGAT
 A G T C A T C G A G C T T A C G T G C A G A T C A G T C G A C T A G C T A G C T A C G T A C G T
A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:CSTGACCTYT-
-CTGACCTTTG
 A G T C A T C G A G C T T A C G T G C A G A T C A G T C G A C T A G C T A G C T A C G T
A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.88
Offset:1
Orientation:forward strand
Alignment:CSTGACCTYT-
-NTGACCTTGA
 A G T C A T C G A G C T T A C G T G C A G A T C A G T C G A C T A G C T A G C T A C G T
A C G T C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A