Information for 6-GTSRCCTTGG (Motif 4)

C T A G G A C T A T G C T C A G G A T C A G T C C G A T G C A T C T A G C A T G
Reverse Opposite:
G T A C G A T C C G T A G C T A A C T G C T A G A G T C T A C G C T G A A G T C
p-value:1e-14
log p-value:-3.227e+01
Information Content per bp:1.637
Number of Target Sequences with motif96.0
Percentage of Target Sequences with motif11.39%
Number of Background Sequences with motif2302.8
Percentage of Background Sequences with motif4.78%
Average Position of motif in Targets56.4 +/- 27.5bp
Average Position of motif in Background49.8 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:GTSRCCTTGG
CTGACCTTTG
 C T A G G A C T A T G C T C A G G A T C A G T C C G A T G C A T C T A G C A T G
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G

NR4A2/MA0160.1/Jaspar

Match Rank:2
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GTSRCCTTGG
GTGACCTT--
 C T A G G A C T A T G C T C A G G A T C A G T C C G A T G C A T C T A G C A T G
A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GTSRCCTTGG
NTGACCTTGA
 C T A G G A C T A T G C T C A G G A T C A G T C C G A T G C A T C T A G C A T G
C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:4
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GTSRCCTTGG
BNTGDCCTTG-
 A C G T C T A G G A C T A T G C T C A G G A T C A G T C C G A T G C A T C T A G C A T G
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:5
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GTSRCCTTGG-
-TGACCTTGAN
 C T A G G A C T A T G C T C A G G A T C A G T C C G A T G C A T C T A G C A T G A C G T
A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GTSRCCTTGG-
-TGACCTTGAV
 C T A G G A C T A T G C T C A G G A T C A G T C C G A T G C A T C T A G C A T G A C G T
A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-GTSRCCTTGG---
NGTTGCCATGGCAA
 A C G T C T A G G A C T A T G C T C A G G A T C A G T C C G A T G C A T C T A G C A T G A C G T A C G T A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

PB0053.1_Rara_1/Jaspar

Match Rank:8
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---GTSRCCTTGG---
NNNGTGACCTTTGNNN
 A C G T A C G T A C G T C T A G G A C T A T G C T C A G G A T C A G T C C G A T G C A T C T A G C A T G A C G T A C G T A C G T
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A

PB0014.1_Esrra_1/Jaspar

Match Rank:9
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----GTSRCCTTGG---
NNNNATGACCTTGANTN
 A C G T A C G T A C G T A C G T C T A G G A C T A T G C T C A G G A T C A G T C C G A T G C A T C T A G C A T G A C G T A C G T A C G T
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GTSRCCTTGG---
GGTTGCCATGGCAA
 A C G T C T A G G A C T A T G C T C A G G A T C A G T C C G A T G C A T C T A G C A T G A C G T A C G T A C G T
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A