p-value: | 1e-5 |
log p-value: | -1.228e+01 |
Information Content per bp: | 1.530 |
Number of Target Sequences with motif | 3.0 |
Percentage of Target Sequences with motif | 0.41% |
Number of Background Sequences with motif | 2.1 |
Percentage of Background Sequences with motif | 0.00% |
Average Position of motif in Targets | 91.7 +/- 2.5bp |
Average Position of motif in Background | 54.9 +/- 22.5bp |
Strand Bias (log2 ratio + to - strand density) | -1.0 |
Multiplicity (# of sites on avg that occur together) | 1.00 |
Motif File: | file (matrix) reverse opposite |
SVG Files for Logos: | forward logo reverse opposite |
PB0152.1_Nkx3-1_2/Jaspar
Match Rank: | 1 |
Score: | 0.78 |
Offset: | -3 |
Orientation: | forward strand |
Alignment: | ---GCAAGTACTT---- ACTCCAAGTACTTGGAA |
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PH0117.1_Nkx3-1/Jaspar
Match Rank: | 2 |
Score: | 0.75 |
Offset: | -2 |
Orientation: | forward strand |
Alignment: | --GCAAGTACTT----- TACTAAGTACTTAAATG |
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PH0112.1_Nkx2-3/Jaspar
Match Rank: | 3 |
Score: | 0.75 |
Offset: | -2 |
Orientation: | reverse strand |
Alignment: | --GCAAGTACTT---- CNTTAAGTACTTAANG |
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PH0116.1_Nkx2-9/Jaspar
Match Rank: | 4 |
Score: | 0.72 |
Offset: | -3 |
Orientation: | reverse strand |
Alignment: | ---GCAAGTACTT---- NATTTAAGTACTTNAAA |
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Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer
Match Rank: | 5 |
Score: | 0.69 |
Offset: | 2 |
Orientation: | forward strand |
Alignment: | GCAAGTACTT-- --AAGCACTTAA |
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SD0002.1_at_AC_acceptor/Jaspar
Match Rank: | 6 |
Score: | 0.68 |
Offset: | -3 |
Orientation: | forward strand |
Alignment: | ---GCAAGTACTT AAGGCAAGTGT-- |
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HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer
Match Rank: | 7 |
Score: | 0.62 |
Offset: | 0 |
Orientation: | forward strand |
Alignment: | GCAAGTACTT GCACGTACCC |
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HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer
Match Rank: | 8 |
Score: | 0.62 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | GCAAGTACTT GCACGTAY-- |
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HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer
Match Rank: | 9 |
Score: | 0.60 |
Offset: | -1 |
Orientation: | reverse strand |
Alignment: | -GCAAGTACTT BGCACGTA--- |
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ARNT::HIF1A/MA0259.1/Jaspar
Match Rank: | 10 |
Score: | 0.58 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | GCAAGTACTT GCACGTNC-- |
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