Information for 13-CTKTGKTCCYAMA (Motif 33)

A G T C A C G T A C G T A C G T A C T G A C T G A C G T A G T C A G T C A G C T G T C A G T A C C G T A
Reverse Opposite:
A C G T A C T G A C G T C T G A A C T G A C T G C G T A G T A C A G T C C G T A G T C A C G T A A C T G
p-value:1e-8
log p-value:-2.025e+01
Information Content per bp:1.878
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.6 +/- 29.5bp
Average Position of motif in Background43.8 +/- 7.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CTKTGKTCCYAMA
YCTTTGTTCC----
 A C G T A G T C A C G T A C G T A C G T A C T G A C T G A C G T A G T C A G T C A G C T G T C A G T A C C G T A
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:2
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----CTKTGKTCCYAMA
TNNTCCTTTGTTCTNNT-
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C T G A C T G A C G T A G T C A G T C A G C T G T C A G T A C C G T A
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:3
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----CTKTGKTCCYAMA
NNNTCCTTTGTTCTNNN-
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C T G A C T G A C G T A G T C A G T C A G C T G T C A G T A C C G T A
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTKTGKTCCYAMA
CCTTTGTTTT----
 A C G T A G T C A C G T A C G T A C G T A C T G A C T G A C G T A G T C A G T C A G C T G T C A G T A C C G T A
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T A C G T A C G T A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CTKTGKTCCYAMA
TGGACTTTGNNCTCN--
 A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C T G A C T G A C G T A G T C A G T C A G C T G T C A G T A C C G T A
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTKTGKTCCYAMA
CCWTTGTYYB----
 A C G T A G T C A C G T A C G T A C G T A C T G A C T G A C G T A G T C A G T C A G C T G T C A G T A C C G T A
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T A C G T A C G T A C G T

PB0040.1_Lef1_1/Jaspar

Match Rank:7
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CTKTGKTCCYAMA
AATCCCTTTGATCTATC-
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C T G A C T G A C G T A G T C A G T C A G C T G T C A G T A C C G T A
C T A G C T G A C G A T A G T C A G T C A G T C G A C T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T T G A C A C G T

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:8
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CTKTGKTCCYAMA
ATTTCCTTTGATCTATA-
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C T G A C T G A C G T A G T C A G T C A G C T G T C A G T A C C G T A
C G T A C G A T C A G T A G C T A G T C A G T C G A C T G A C T C G A T A C T G C G T A C G A T T A G C G C A T C G T A C A G T T G C A A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CTKTGKTCCYAMA
NCCATTGTTC-----
 A C G T A C G T A G T C A C G T A C G T A C G T A C T G A C T G A C G T A G T C A G T C A G C T G T C A G T A C C G T A
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T A C G T A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:10
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CTKTGKTCCYAMA
TGGACTTTGNNCTNTG-
 A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C T G A C T G A C G T A G T C A G T C A G C T G T C A G T A C C G T A
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G A C G T