Information for 3-AGAGCTTCTGCAGCYT (Motif 6)

C G T A T A C G C G T A A C T G A G T C A C G T A G C T A G T C A C G T A T C G A T G C C G T A A C T G A G T C A G T C C A G T
Reverse Opposite:
G T C A T C A G T C A G T A G C C G A T A T C G A T G C C G T A A C T G C T G A T G C A T A C G A G T C A C G T A T G C A C G T
p-value:1e-12
log p-value:-2.794e+01
Information Content per bp:1.745
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.1 +/- 24.9bp
Average Position of motif in Background42.8 +/- 22.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:1
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:AGAGCTTCTGCAGCYT-
--AGATGCTRCTRCCHT
 C G T A T A C G C G T A A C T G A G T C A C G T A G C T A G T C A C G T A T C G A T G C C G T A A C T G A G T C A G T C C A G T A C G T
A C G T A C G T C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:2
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--AGAGCTTCTGCAGCYT
GVACAGNMTGTYCTB---
 A C G T A C G T C G T A T A C G C G T A A C T G A G T C A C G T A G C T A G T C A C G T A T C G A T G C C G T A A C T G A G T C A G T C C A G T
C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G A C G T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:3
Score:0.51
Offset:3
Orientation:forward strand
Alignment:AGAGCTTCTGCAGCYT
---GCTTCC-------
 C G T A T A C G C G T A A C T G A G T C A C G T A G C T A G T C A C G T A T C G A T G C C G T A A C T G A G T C A G T C C A G T
A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:4
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-AGAGCTTCTGCAGCYT
AGCAGCTGCTNN-----
 A C G T C G T A T A C G C G T A A C T G A G T C A C G T A G C T A G T C A C G T A T C G A T G C C G T A A C T G A G T C A G T C C A G T
C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C A C G T A C G T A C G T A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:5
Score:0.49
Offset:-4
Orientation:forward strand
Alignment:----AGAGCTTCTGCAGCYT
CTCAGCAGCTGCTACTG---
 A C G T A C G T A C G T A C G T C G T A T A C G C G T A A C T G A G T C A C G T A G C T A G T C A C G T A T C G A T G C C G T A A C T G A G T C A G T C C A G T
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G A C G T A C G T A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:6
Score:0.49
Offset:0
Orientation:forward strand
Alignment:AGAGCTTCTGCAGCYT
CAAGCTT---------
 C G T A T A C G C G T A A C T G A G T C A C G T A G C T A G T C A C G T A T C G A T G C C G T A A C T G A G T C A G T C C A G T
G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Ascl2/MA0816.1/Jaspar

Match Rank:7
Score:0.49
Offset:2
Orientation:forward strand
Alignment:AGAGCTTCTGCAGCYT
--AGCAGCTGCT----
 C G T A T A C G C G T A A C T G A G T C A C G T A G C T A G T C A C G T A T C G A T G C C G T A A C T G A G T C A G T C C A G T
A C G T A C G T T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T A C G T A C G T A C G T A C G T

MSC/MA0665.1/Jaspar

Match Rank:8
Score:0.48
Offset:-1
Orientation:forward strand
Alignment:-AGAGCTTCTGCAGCYT
AACAGCTGTT-------
 A C G T C G T A T A C G C G T A A C T G A G T C A C G T A G C T A G T C A C G T A T C G A T G C C G T A A C T G A G T C A G T C C A G T
C T G A T G C A A T G C C G T A A T C G A T G C A C G T A C T G A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.48
Offset:1
Orientation:forward strand
Alignment:AGAGCTTCTGCAGCYT
-VBSYGTCTGG-----
 C G T A T A C G C G T A A C T G A G T C A C G T A G C T A G T C A C G T A T C G A T G C C G T A A C T G A G T C A G T C C A G T
A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

Tcf21/MA0832.1/Jaspar

Match Rank:10
Score:0.47
Offset:-3
Orientation:reverse strand
Alignment:---AGAGCTTCTGCAGCYT
NCAACAGCTGTTGC-----
 A C G T A C G T A C G T C G T A T A C G C G T A A C T G A G T C A C G T A G C T A G T C A C G T A T C G A T G C C G T A A C T G A G T C A G T C C A G T
T C G A A G T C C T G A T G C A A G T C C G T A T A C G G T A C A C G T A C T G A C G T G A C T C T A G A G T C A C G T A C G T A C G T A C G T A C G T