Information for 10-CAGACAATGT (Motif 32)

A T G C C G T A A T C G G T C A T G A C C G T A C T G A A C G T A C T G A C G T
Reverse Opposite:
C G T A A G T C C G T A G A C T G A C T A C T G A C G T A T G C A C G T A T C G
p-value:1e-7
log p-value:-1.823e+01
Information Content per bp:1.842
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.41%
Number of Background Sequences with motif184.6
Percentage of Background Sequences with motif0.41%
Average Position of motif in Targets44.9 +/- 23.9bp
Average Position of motif in Background52.1 +/- 41.9bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17/MA0078.1/Jaspar

Match Rank:1
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:CAGACAATGT-
--GACAATGNN
 A T G C C G T A A T C G G T C A T G A C C G T A C T G A A C G T A C T G A C G T A C G T
A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CAGACAATGT
BCAGACWA---
 A C G T A T G C C G T A A T C G G T C A T G A C C G T A C T G A A C G T A C T G A C G T
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CAGACAATGT
CCAGACAG---
 A C G T A T G C C G T A A T C G G T C A T G A C C G T A C T G A A C G T A C T G A C G T
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CAGACAATGT---
CTCACACAATGGCGC
 A C G T A C G T A T G C C G T A A T C G G T C A T G A C C G T A C T G A A C G T A C T G A C G T A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CAGACAATGT
CCAGACRSVB-
 A C G T A T G C C G T A A T C G G T C A T G A C C G T A C T G A A C G T A C T G A C G T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:6
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----CAGACAATGT
ATTTGCATACAATGG
 A C G T A C G T A C G T A C G T A C G T A T G C C G T A A T C G G T C A T G A C C G T A C T G A A C G T A C T G A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CAGACAATGT
VRAACAATGG
 A T G C C G T A A T C G G T C A T G A C C G T A C T G A A C G T A C T G A C G T
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

Sox6/MA0515.1/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CAGACAATGT
AAAACAATGG
 A T G C C G T A A T C G G T C A T G A C C G T A C T G A A C G T A C T G A C G T
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

SOX10/MA0442.1/Jaspar

Match Rank:9
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CAGACAATGT
---ACAAAG-
 A T G C C G T A A T C G G T C A T G A C C G T A C T G A A C G T A C T G A C G T
A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:10
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------CAGACAATGT-
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G T A A T C G G T C A T G A C C G T A C T G A A C G T A C T G A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A