Information for 9-AGGTCTGGAGCATGCA (Motif 15)

C G T A T A C G T C A G A C G T A T G C G C A T A C T G A C T G G C T A A T C G G T A C C T G A A C G T A T C G T G A C C T G A
Reverse Opposite:
A G C T A C T G A T G C T G C A G A C T C A T G T A G C C A G T T G A C A G T C C G T A A T C G T C G A A G T C A T G C C G A T
p-value:1e-10
log p-value:-2.372e+01
Information Content per bp:1.680
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.42%
Number of Background Sequences with motif28.2
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets49.1 +/- 25.5bp
Average Position of motif in Background52.9 +/- 24.0bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AGGTCTGGAGCATGCA
-GGTCTGGCAT-----
 C G T A T A C G T C A G A C G T A T G C G C A T A C T G A C T G G C T A A T C G G T A C C T G A A C G T A T C G T G A C C T G A
A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T A C G T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:2
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:AGGTCTGGAGCATGCA-
--WYATGCATWATGCAT
 C G T A T A C G T C A G A C G T A T G C G C A T A C T G A C T G G C T A A T C G G T A C C T G A A C G T A T C G T G A C C T G A A C G T
A C G T A C G T C G T A A G C T C G T A A C G T A C T G G T A C C G T A A C G T C G A T C G T A A C G T A C T G A G T C C G T A C G A T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----AGGTCTGGAGCATGCA
NNTNNTGTCTGGNNTNG---
 A C G T A C G T A C G T A C G T C G T A T A C G T C A G A C G T A T G C G C A T A C T G A C T G G C T A A T C G G T A C C T G A A C G T A T C G T G A C C T G A
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T A C G T A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:AGGTCTGGAGCATGCA-
-----TGAATTATGCAT
 C G T A T A C G T C A G A C G T A T G C G C A T A C T G A C T G G C T A A T C G G T A C C T G A A C G T A T C G T G A C C T G A A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T

TBX20/MA0689.1/Jaspar

Match Rank:5
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-AGGTCTGGAGCATGCA
TAGGTGTGAAG------
 A C G T C G T A T A C G T C A G A C G T A T G C G C A T A C T G A C T G G C T A A T C G G T A C C T G A A C G T A T C G T G A C C T G A
C G A T C T G A T C A G A C T G A C G T A C T G C A G T C A T G C G T A C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T

ZEB1/MA0103.2/Jaspar

Match Rank:6
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-AGGTCTGGAGCATGCA
CAGGTGAGG--------
 A C G T C G T A T A C G T C A G A C G T A T G C G C A T A C T G A C T G G C T A A T C G G T A C C T G A A C G T A T C G T G A C C T G A
A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TBX21/MA0690.1/Jaspar

Match Rank:7
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-AGGTCTGGAGCATGCA
AAGGTGTGAA-------
 A C G T C G T A T A C G T C A G A C G T A T G C G C A T A C T G A C T G G C T A A T C G G T A C C T G A A C G T A T C G T G A C C T G A
C T G A C T G A C T A G A C T G A G C T C A T G G A C T A C T G C T G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--AGGTCTGGAGCATGCA
VBSYGTCTGG--------
 A C G T A C G T C G T A T A C G T C A G A C G T A T G C G C A T A C T G A C T G G C T A A T C G G T A C C T G A A C G T A T C G T G A C C T G A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.50
Offset:0
Orientation:forward strand
Alignment:AGGTCTGGAGCATGCA
CTGTCTGG--------
 C G T A T A C G T C A G A C G T A T G C G C A T A C T G A C T G G C T A A T C G G T A C C T G A A C G T A T C G T G A C C T G A
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TBX15/MA0803.1/Jaspar

Match Rank:10
Score:0.49
Offset:0
Orientation:forward strand
Alignment:AGGTCTGGAGCATGCA
AGGTGTGA--------
 C G T A T A C G T C A G A C G T A T G C G C A T A C T G A C T G G C T A A T C G G T A C C T G A A C G T A T C G T G A C C T G A
C T G A C T A G T C A G A C G T A T C G A G C T A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T