Information for 5-GAACARATATTGA (Motif 5)

A T C G C G T A C G T A A G T C C G T A C T G A C G T A A C G T C G T A A C G T C G A T T A C G C T G A
Reverse Opposite:
A G C T A G T C C G T A C G T A C G A T G T C A A C G T A G C T C G A T C T A G G C A T A C G T A T G C
p-value:1e-13
log p-value:-3.087e+01
Information Content per bp:1.776
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.3 +/- 24.6bp
Average Position of motif in Background61.3 +/- 3.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.67
Offset:3
Orientation:forward strand
Alignment:GAACARATATTGA----
---CTAATATTGCTAAA
 A T C G C G T A C G T A A G T C C G T A C T G A C G T A A C G T C G T A A C G T C G A T T A C G C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.67
Offset:3
Orientation:forward strand
Alignment:GAACARATATTGA----
---CTAATATTGCTAAA
 A T C G C G T A C G T A A G T C C G T A C T G A C G T A A C G T C G T A A C G T C G A T T A C G C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

Foxd3/MA0041.1/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GAACARATATTGA
AAACAAACATTC-
 A T C G C G T A C G T A A G T C C G T A C T G A C G T A A C G T C G T A A C G T C G A T T A C G C T G A
C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C A C G T

TAL1::TCF3/MA0091.1/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GAACARATATTGA
-AACAGATGGTCN
 A T C G C G T A C G T A A G T C C G T A C T G A C G T A A C G T C G T A A C G T C G A T T A C G C T G A
A C G T C G T A T G C A G T A C C G T A A C T G T G C A A C G T A T C G A C T G G A C T A T G C C A T G

MYF6/MA0667.1/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GAACARATATTGA
-AACAGCTGTT--
 A T C G C G T A C G T A A G T C C G T A C T G A C G T A A C G T C G T A A C G T C G A T T A C G C T G A
A C G T T C G A T C G A A G T C T C G A T C A G A G T C C G A T A T C G G A C T A G C T A C G T A C G T

POU4F1/MA0790.1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GAACARATATTGA-
CATTAATTATTCAT
 A T C G C G T A C G T A A G T C C G T A C T G A C G T A A C G T C G T A A C G T C G A T T A C G C T G A A C G T
G T A C C T G A A G C T G C A T G C T A G C T A G C A T G C A T C G T A C G A T C A G T G A T C C T G A A G C T

OLIG1/MA0826.1/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GAACARATATTGA
-AACATATGTT--
 A T C G C G T A C G T A A G T C C G T A C T G A C G T A A C G T C G T A A C G T C G A T T A C G C T G A
A C G T C T G A T G C A G T A C C G T A A C G T T G C A G A C T A C T G A C G T A G C T A C G T A C G T

POU4F3/MA0791.1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GAACARATATTGA-
CTCATTAATTATGCAT
 A C G T A C G T A T C G C G T A C G T A A G T C C G T A C T G A C G T A A C G T C G T A A C G T C G A T T A C G C T G A A C G T
A G T C C A G T G T A C C T G A G A C T G C A T G C T A G C T A G C A T G C A T G C T A C G A T C A T G G A T C T C G A G A C T

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GAACARATATTGA
GGTTAAACATTAA
 A T C G C G T A C G T A A G T C C G T A C T G A C G T A A C G T C G T A A C G T C G A T T A C G C T G A
C T A G C T A G G C A T C G A T C T G A G T C A G C T A A T G C C G T A C A G T G A C T C G T A T G C A

MSC/MA0665.1/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GAACARATATTGA
-AACAGCTGTT--
 A T C G C G T A C G T A A G T C C G T A C T G A C G T A A C G T C G T A A C G T C G A T T A C G C T G A
A C G T T C G A T C G A G T A C C G T A A T C G A T G C A C G T T A C G A C G T G A C T A C G T A C G T