Information for 3-CAGGTCAGAT (Motif 3)

A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G C G T A A C G T
Reverse Opposite:
C G T A A C G T A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G
p-value:1e-17
log p-value:-3.986e+01
Information Content per bp:1.530
Number of Target Sequences with motif172.0
Percentage of Target Sequences with motif21.00%
Number of Background Sequences with motif4978.9
Percentage of Background Sequences with motif10.66%
Average Position of motif in Targets48.1 +/- 25.8bp
Average Position of motif in Background49.9 +/- 33.9bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CAGGTCAGAT
-AGGTCA---
 A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G C G T A A C G T
A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-CAGGTCAGAT
TRAGGTCA---
 A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G C G T A A C G T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:3
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CAGGTCAGAT
ATCAAGGTCA---
 A C G T A C G T A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G C G T A A C G T
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T

ZEB1/MA0103.2/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CAGGTCAGAT
CAGGTGAGG-
 A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G C G T A A C G T
A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:5
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CAGGTCAGAT
AGRGGTCA---
 A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G C G T A A C G T
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CAGGTCAGAT
AAGGTCAC--
 A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G C G T A A C G T
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CAGGTCAGAT
CAAAGGTCAG--
 A C G T A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G C G T A A C G T
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CAGGTCAGAT-
CAGGTAAGTAT
 A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G C G T A A C G T A C G T
T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CAGGTCAGAT-------
AAGGCCAGATGGTCCGG
 A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G C T A T C G A C T A G C A T G T A G C G T A C C T G A A C T G T C G A C G A T A C T G C A T G A G C T G A T C A T G C A T C G T C A G

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CAGGTCAGAT
TCAAGGTCAN--
 A C G T A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G C G T A A C G T
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T