Information for 10-CCTGCCCTAT (Motif 20)

G T A C G A T C C G A T C T A G T G A C A T G C A G T C G C A T T C G A G C A T
Reverse Opposite:
C G T A A G C T C G T A C T A G A T C G A C T G A G T C G C T A C T A G C A T G
p-value:1e-9
log p-value:-2.152e+01
Information Content per bp:1.646
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif3.66%
Number of Background Sequences with motif432.5
Percentage of Background Sequences with motif0.93%
Average Position of motif in Targets53.3 +/- 24.1bp
Average Position of motif in Background49.8 +/- 31.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.77
Offset:1
Orientation:forward strand
Alignment:CCTGCCCTAT
-CTGCCCGCA
 G T A C G A T C C G A T C T A G T G A C A T G C A G T C G C A T T C G A G C A T
A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

PB0133.1_Hic1_2/Jaspar

Match Rank:2
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---CCTGCCCTAT---
GGGTGTGCCCAAAAGG
 A C G T A C G T A C G T G T A C G A T C C G A T C T A G T G A C A T G C A G T C G C A T T C G A G C A T A C G T A C G T A C G T
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:CCTGCCCTAT
--TGACCTYA
 G T A C G A T C C G A T C T A G T G A C A T G C A G T C G C A T T C G A G C A T
A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

HIC2/MA0738.1/Jaspar

Match Rank:4
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CCTGCCCTAT
-ATGCCCACC
 G T A C G A T C C G A T C T A G T G A C A T G C A G T C G C A T T C G A G C A T
A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CCTGCCCTAT-
-CTGACCTTTG
 G T A C G A T C C G A T C T A G T G A C A T G C A G T C G C A T T C G A G C A T A C G T
A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CCTGCCCTAT
--TGACCT--
 G T A C G A T C C G A T C T A G T G A C A T G C A G T C G C A T T C G A G C A T
A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCCCTAT
NNACTTGCCTT--
 A C G T A C G T A C G T G T A C G A T C C G A T C T A G T G A C A T G C A G T C G C A T T C G A G C A T
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:8
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CCTGCCCTAT--
--TGACCTARTT
 G T A C G A T C C G A T C T A G T G A C A T G C A G T C G C A T T C G A G C A T A C G T A C G T
A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CCTGCCCTAT
--TGACCYCT
 G T A C G A T C C G A T C T A G T G A C A T G C A G T C G C A T T C G A G C A T
A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

RORA/MA0071.1/Jaspar

Match Rank:10
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CCTGCCCTAT--
--TGACCTTGAT
 G T A C G A T C C G A T C T A G T G A C A T G C A G T C G C A T T C G A G C A T A C G T A C G T
A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T