Information for 5-GGCMDGCCTGSHWSCY (Motif 12)

T C A G T A C G G T A C G T C A C A T G A T C G T A G C A G T C C G A T A C T G A T C G G T A C C G A T T A C G G T A C G A C T
Reverse Opposite:
C T G A C A T G A T G C G C T A C A T G T A G C G T A C G C T A T C A G A T C G T A G C G A T C C A G T C A T G A T G C A G T C
p-value:1e-11
log p-value:-2.713e+01
Information Content per bp:1.483
Number of Target Sequences with motif87.0
Percentage of Target Sequences with motif10.62%
Number of Background Sequences with motif2171.7
Percentage of Background Sequences with motif4.65%
Average Position of motif in Targets50.8 +/- 26.5bp
Average Position of motif in Background49.2 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GGCMDGCCTGSHWSCY
GTCATGCHTGRCTGS-
 T C A G T A C G G T A C G T C A C A T G A T C G T A G C A G T C C G A T A C T G A T C G G T A C C G A T T A C G G T A C G A C T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.59
Offset:6
Orientation:forward strand
Alignment:GGCMDGCCTGSHWSCY
------GCTGTG----
 T C A G T A C G G T A C G T C A C A T G A T C G T A G C A G T C C G A T A C T G A T C G G T A C C G A T T A C G G T A C G A C T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GGCMDGCCTGSHWSCY
---AGGCCTNG-----
 T C A G T A C G G T A C G T C A C A T G A T C G T A G C A G T C C G A T A C T G A T C G G T A C C G A T T A C G G T A C G A C T
A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:4
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GGCMDGCCTGSHWSCY
----GGTCTGGCAT--
 T C A G T A C G G T A C G T C A C A T G A T C G T A G C A G T C C G A T A C T G A T C G G T A C C G A T T A C G G T A C G A C T
A C G T A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GGCMDGCCTGSHWSCY
---CTGTCTGTCACCT
 T C A G T A C G G T A C G T C A C A T G A T C G T A G C A G T C C G A T A C T G A T C G G T A C C G A T T A C G G T A C G A C T
A C G T A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GGCMDGCCTGSHWSCY
---CTGTCTGG-----
 T C A G T A C G G T A C G T C A C A T G A T C G T A G C A G T C C G A T A C T G A T C G G T A C C G A T T A C G G T A C G A C T
A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GGCMDGCCTGSHWSCY
-VBSYGTCTGG-----
 T C A G T A C G G T A C G T C A C A T G A T C G T A G C A G T C C G A T A C T G A T C G G T A C C G A T T A C G G T A C G A C T
A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GGCMDGCCTGSHWSCY
---TWGTCTGV-----
 T C A G T A C G G T A C G T C A C A T G A T C G T A G C A G T C C G A T A C T G A T C G G T A C C G A T T A C G G T A C G A C T
A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GGCMDGCCTGSHWSCY
GGNGCGNCTGTTNNN-
 T C A G T A C G G T A C G T C A C A T G A T C G T A G C A G T C C G A T A C T G A T C G G T A C C G A T T A C G G T A C G A C T
C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GGCMDGCCTGSHWSCY
----TGTCTGDCACCT
 T C A G T A C G G T A C G T C A C A T G A T C G T A G C A G T C C G A T A C T G A T C G G T A C C G A T T A C G G T A C G A C T
A C G T A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T