Information for 5-SAGCMWGGCAGCAWKG (Motif 6)

T A G C G T C A A C T G A G T C G T C A C G A T A T C G A T C G A T G C C G T A C A T G T A G C C G T A C G T A A C G T A C T G
Reverse Opposite:
A G T C G T C A G C A T G C A T A T C G G T A C C G A T T A C G A T G C T A G C G C T A C A G T A C T G G T A C A C G T A T C G
p-value:1e-15
log p-value:-3.489e+01
Information Content per bp:1.690
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.50%
Number of Background Sequences with motif45.7
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets56.9 +/- 21.9bp
Average Position of motif in Background51.4 +/- 33.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:1
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--SAGCMWGGCAGCAWKG
GGAAGGAAGGAAGGAAGG
 A C G T A C G T T A G C G T C A A C T G A G T C G T C A C G A T A T C G A T C G A T G C C G T A C A T G T A G C C G T A C G T A A C G T A C T G
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.53
Offset:0
Orientation:forward strand
Alignment:SAGCMWGGCAGCAWKG
CAGCC-----------
 T A G C G T C A A C T G A G T C G T C A C G A T A T C G A T C G A T G C C G T A C A T G T A G C C G T A C G T A A C G T A C T G
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:SAGCMWGGCAGCAWKG
---CTTGGCAA-----
 T A G C G T C A A C T G A G T C G T C A C G A T A T C G A T C G A T G C C G T A C A T G T A G C C G T A C G T A A C G T A C T G
A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:4
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---SAGCMWGGCAGCAWKG
GTCATGCHTGRCTGS----
 A C G T A C G T A C G T T A G C G T C A A C T G A G T C G T C A C G A T A T C G A T C G A T G C C G T A C A T G T A G C C G T A C G T A A C G T A C T G
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.50
Offset:-5
Orientation:forward strand
Alignment:-----SAGCMWGGCAGCAWKG
CCACACAGCAGGAGA------
 A C G T A C G T A C G T A C G T A C G T T A G C G T C A A C T G A G T C G T C A C G A T A T C G A T C G A T G C C G T A C A T G T A G C C G T A C G T A A C G T A C T G
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---SAGCMWGGCAGCAWKG
DCTCAGCAGG---------
 A C G T A C G T A C G T T A G C G T C A A C T G A G T C G T C A C G A T A T C G A T C G A T G C C G T A C A T G T A G C C G T A C G T A A C G T A C T G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.49
Offset:2
Orientation:forward strand
Alignment:SAGCMWGGCAGCAWKG
--SCCTAGCAACAG--
 T A G C G T C A A C T G A G T C G T C A C G A T A T C G A T C G A T G C C G T A C A T G T A G C C G T A C G T A A C G T A C T G
A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:8
Score:0.48
Offset:0
Orientation:forward strand
Alignment:SAGCMWGGCAGCAWKG
CAAGATGGCGGC----
 T A G C G T C A A C T G A G T C G T C A C G A T A T C G A T C G A T G C C G T A C A T G T A G C C G T A C G T A A C G T A C T G
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:9
Score:0.48
Offset:-5
Orientation:forward strand
Alignment:-----SAGCMWGGCAGCAWKG
GAGCACAGCAGGACA------
 A C G T A C G T A C G T A C G T A C G T T A G C G T C A A C T G A G T C G T C A C G A T A T C G A T C G A T G C C G T A C A T G T A G C C G T A C G T A A C G T A C T G
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.48
Offset:-5
Orientation:forward strand
Alignment:-----SAGCMWGGCAGCAWKG
CCACACAGCAGGAGA------
 A C G T A C G T A C G T A C G T A C G T T A G C G T C A A C T G A G T C G T C A C G A T A T C G A T C G A T G C C G T A C A T G T A G C C G T A C G T A A C G T A C T G
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T A C G T A C G T