Information for 10-CAGGCTGATA (Motif 38)

T A G C C G T A C A T G C T A G A G T C A C G T A C T G C T G A A C G T C T G A
Reverse Opposite:
A G C T G T C A A G C T A G T C C G T A A C T G A G T C G A T C A C G T A T C G
p-value:1e-6
log p-value:-1.559e+01
Information Content per bp:1.861
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif2.33%
Number of Background Sequences with motif159.9
Percentage of Background Sequences with motif0.39%
Average Position of motif in Targets42.2 +/- 22.4bp
Average Position of motif in Background45.2 +/- 35.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CAGGCTGATA
CCTGCTGAGH
 T A G C C G T A C A T G C T A G A G T C A C G T A C T G C T G A A C G T C T G A
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0022.1_Gata5_1/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CAGGCTGATA-------
TAAACTGATAAGAAGAT
 T A G C C G T A C A T G C T A G A G T C A C G T A C T G C T G A A C G T C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G C A T C G T A C G T A C T G A A G T C G C A T A C T G C G T A C G A T G C T A C G T A T A C G T C G A T C G A C A T G C G T A C A G T

POL002.1_INR/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CAGGCTGATA
NNNANTGA--
 T A G C C G T A C A T G C T A G A G T C A C G T A C T G C T G A A C G T C T G A
T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CAGGCTGATA
--NGCTN---
 T A G C C G T A C A T G C T A G A G T C A C G T A C T G C T G A A C G T C T G A
A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CAGGCTGATA
AATTTGCTGAC-
 A C G T A C G T T A G C C G T A C A T G C T A G A G T C A C G T A C T G C T G A A C G T C T G A
C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C A C G T

GATA5/MA0766.1/Jaspar

Match Rank:6
Score:0.59
Offset:5
Orientation:forward strand
Alignment:CAGGCTGATA---
-----AGATAAGA
 T A G C C G T A C A T G C T A G A G T C A C G T A C T G C T G A A C G T C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A A C T G C T G A A C G T G C T A C T G A T A C G T C G A

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CAGGCTGATA--
TCNCCTGCTGNGNNN
 A C G T A C G T A C G T T A G C C G T A C A T G C T A G A G T C A C G T A C T G C T G A A C G T C T G A A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer

Match Rank:8
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CAGGCTGATA---
---NBWGATAAGR
 T A G C C G T A C A T G C T A G A G T C A C G T A C T G C T G A A C G T C T G A A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A T G C G C T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CAGGCTGATA
TWGTCTGV--
 T A G C C G T A C A T G C T A G A G T C A C G T A C T G C T G A A C G T C T G A
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CAGGCTGATA-
-AAGGTGTKAA
 T A G C C G T A C A T G C T A G A G T C A C G T A C T G C T G A A C G T C T G A A C G T
A C G T C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A