Information for 11-CATGGCTACABCT (Motif 29)

A G T C G T C A G C A T C A T G A C T G A G T C C G A T T G C A A G T C C G T A A C T G A G T C A G C T
Reverse Opposite:
C T G A A C T G T A G C C G A T A C T G A C G T C G T A A C T G A G T C G T A C C G T A C A G T C T A G
p-value:1e-8
log p-value:-2.008e+01
Information Content per bp:1.798
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.5 +/- 23.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1/MA0509.1/Jaspar

Match Rank:1
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CATGGCTACABCT
GTTGCCATGGCAAC----
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A G C A T C A T G A C T G A G T C C G A T T G C A A G T C C G T A A C T G A G T C A G C T
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CATGGCTACABCT
TTGCCATGGCAACN---
 A C G T A C G T A C G T A C G T A G T C G T C A G C A T C A T G A C T G A G T C C G A T T G C A A G T C C G T A A C T G A G T C A G C T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T A C G T A C G T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CATGGCTACABCT--
---GGCTCYAKCAYC
 A G T C G T C A G C A T C A T G A C T G A G T C C G A T T G C A A G T C C G T A A C T G A G T C A G C T A C G T A C G T
A C G T A C G T A C G T C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C

PB0159.1_Rfx4_2/Jaspar

Match Rank:4
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CATGGCTACABCT
TACCCTAGTTACCGA-
 A C G T A C G T A C G T A G T C G T C A G C A T C A T G A C T G A G T C C G A T T G C A A G T C C G T A A C T G A G T C A G C T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CATGGCTACABCT
SCCTAGCAACAG--
 A C G T A G T C G T C A G C A T C A T G A C T G A G T C C G A T T G C A A G T C C G T A A C T G A G T C A G C T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CATGGCTACABCT
TTGCCATGGCAACC---
 A C G T A C G T A C G T A C G T A G T C G T C A G C A T C A T G A C T G A G T C C G A T T G C A A G T C C G T A A C T G A G T C A G C T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T A C G T A C G T

RFX4/MA0799.1/Jaspar

Match Rank:7
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------CATGGCTACABCT
CGTTGCCATGGCAACN---
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T C A G C A T C A T G A C T G A G T C C G A T T G C A A G T C C G T A A C T G A G T C A G C T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G A C G T A C G T A C G T

PB0158.1_Rfx3_2/Jaspar

Match Rank:8
Score:0.56
Offset:-7
Orientation:forward strand
Alignment:-------CATGGCTACABCT---
ACTGACCCTTGGTTACCACAAAG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T C A G C A T C A T G A C T G A G T C C G A T T G C A A G T C C G T A A C T G A G T C A G C T A C G T A C G T A C G T
T G C A A G T C A C G T A T C G G C T A A T G C T A C G A T G C G C A T C G A T T C A G A C T G C G A T C A G T C G T A G A T C T G A C T C G A T G A C T C G A T C G A C G T A A T C G

DMRT3/MA0610.1/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CATGGCTACABCT
-NTTGATACATT-
 A G T C G T C A G C A T C A T G A C T G A G T C C G A T T G C A A G T C C G T A A C T G A G T C A G C T
A C G T C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T A C G T

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------CATGGCTACABCT
KGTTGCCATGGCAAC----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T C A G C A T C A T G A C T G A G T C C G A T T G C A A G T C C G T A A C T G A G T C A G C T
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C A C G T A C G T A C G T A C G T