Information for 1-RAGGTCACRSTGACMC (Motif 1)

C T G A C G T A C T A G A C T G A C G T A G T C C T G A A T G C C T A G T A G C A C G T A C T G G T C A A T G C G T C A G A T C
Reverse Opposite:
C T A G A C G T A T C G A C G T A G T C C G T A A T C G A G T C T A C G A G C T A C T G T C G A G T A C G A T C C G A T A G C T
p-value:1e-21
log p-value:-5.048e+01
Information Content per bp:1.715
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.66%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.5 +/- 14.5bp
Average Position of motif in Background28.7 +/- 10.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.88
Offset:0
Orientation:forward strand
Alignment:RAGGTCACRSTGACMC
NAGGTCACNNTGACC-
 C T G A C G T A C T A G A C T G A C G T A G T C C T G A A T G C C T A G T A G C A C G T A C T G G T C A A T G C G T C A G A T C
T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C A C G T

ESR1/MA0112.3/Jaspar

Match Rank:2
Score:0.85
Offset:0
Orientation:forward strand
Alignment:RAGGTCACRSTGACMC-
AAGGTCACGGTGACCTG
 C T G A C G T A C T A G A C T G A C G T A G T C C T G A A T G C C T A G T A G C A C G T A C T G G T C A A T G C G T C A G A T C A C G T
C T G A T C G A A C T G C T A G A C G T G A T C C T G A T G A C T A C G T C A G A G C T C T A G T C G A A T G C G T A C A G C T A C T G

ESR2/MA0258.2/Jaspar

Match Rank:3
Score:0.84
Offset:1
Orientation:forward strand
Alignment:RAGGTCACRSTGACMC
-AGGTCACCCTGACCT
 C T G A C G T A C T A G A C T G A C G T A G T C C T G A A T G C C T A G T A G C A C G T A C T G G T C A A T G C G T C A G A T C
A C G T C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

PPARG/MA0066.1/Jaspar

Match Rank:4
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-RAGGTCACRSTGACMC---
GTAGGTCACGGTGACCTACT
 A C G T C T G A C G T A C T A G A C T G A C G T A G T C C T G A A T G C C T A G T A G C A C G T A C T G G T C A A T G C G T C A G A T C A C G T A C G T A C G T
A T C G C G A T C T G A A T C G C A T G A C G T T A G C G C T A G T A C A T C G C A T G C A G T T A C G G T C A G T A C A G T C G A C T G T C A A T G C C G A T

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.69
Offset:0
Orientation:forward strand
Alignment:RAGGTCACRSTGACMC
AAGGTCAC--------
 C T G A C G T A C T A G A C T G A C G T A G T C C T G A A T G C C T A G T A G C A C G T A C T G G T C A A T G C G T C A G A T C
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-RAGGTCACRSTGACMC
TRAGGTCA---------
 A C G T C T G A C G T A C T A G A C T G A C G T A G T C C T G A A T G C C T A G T A G C A C G T A C T G G T C A A T G C G T C A G A T C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--RAGGTCACRSTGACMC
TCAAGGTCAN--------
 A C G T A C G T C T G A C G T A C T A G A C T G A C G T A G T C C T G A A T G C C T A G T A G C A C G T A C T G G T C A A T G C G T C A G A T C
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-RAGGTCACRSTGACMC
AGRGGTCA---------
 A C G T C T G A C G T A C T A G A C T G A C G T A G T C C T G A A T G C C T A G T A G C A C G T A C T G G T C A A T G C G T C A G A T C
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:9
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----RAGGTCACRSTGACMC
TCTCAAAGGTCACCTG-----
 A C G T A C G T A C G T A C G T A C G T C T G A C G T A C T A G A C T G A C G T A G T C C T G A A T G C C T A G T A G C A C G T A C T G G T C A A T G C G T C A G A T C
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G A C G T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--RAGGTCACRSTGACMC
CAAAGGTCAG--------
 A C G T A C G T C T G A C G T A C T A G A C T G A C G T A G T C C T G A A T G C C T A G T A G C A C G T A C T G G T C A A T G C G T C A G A T C
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T