Information for 3-AACAGGTCAA (Motif 5)

G C T A C G T A G T A C C T G A A C T G A C T G A C G T A T G C C G T A C G T A
Reverse Opposite:
G C A T A C G T A T C G C G T A G T A C G T A C A G C T A C T G G C A T C G A T
p-value:1e-12
log p-value:-2.957e+01
Information Content per bp:1.839
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.50%
Number of Background Sequences with motif104.7
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets57.0 +/- 23.8bp
Average Position of motif in Background47.8 +/- 38.3bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0049.1_Nr2f2_1/Jaspar

Match Rank:1
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---AACAGGTCAA---
TCTCAAAGGTCACGAG
 A C G T A C G T A C G T G C T A C G T A G T A C C T G A A C T G A C T G A C G T A T G C C G T A C G T A A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.77
Offset:3
Orientation:forward strand
Alignment:AACAGGTCAA
---AGGTCA-
 G C T A C G T A G T A C C T G A A C T G A C T G A C G T A T G C C G T A C G T A
A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:3
Score:0.76
Offset:0
Orientation:forward strand
Alignment:AACAGGTCAA---
CAAAGGTCAAGGG
 G C T A C G T A G T A C C T G A A C T G A C T G A C G T A T G C C G T A C G T A A C G T A C G T A C G T
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.76
Offset:1
Orientation:forward strand
Alignment:AACAGGTCAA
-TRAGGTCA-
 G C T A C G T A G T A C C T G A A C T G A C T G A C G T A T G C C G T A C G T A
A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:5
Score:0.75
Offset:1
Orientation:forward strand
Alignment:AACAGGTCAA
-AGRGGTCA-
 G C T A C G T A G T A C C T G A A C T G A C T G A C G T A T G C C G T A C G T A
A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T

RORA/MA0071.1/Jaspar

Match Rank:6
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-AACAGGTCAA
ATCAAGGTCA-
 A C G T G C T A C G T A G T A C C T G A A C T G A C T G A C G T A T G C C G T A C G T A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:7
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---AACAGGTCAA---
TCTCAAAGGTCACCTG
 A C G T A C G T A C G T G C T A C G T A G T A C C T G A A C T G A C T G A C G T A T G C C G T A C G T A A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:8
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---AACAGGTCAA
ANGNAAAGGTCA-
 A C G T A C G T A C G T G C T A C G T A G T A C C T G A A C T G A C T G A C G T A T G C C G T A C G T A
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.70
Offset:2
Orientation:forward strand
Alignment:AACAGGTCAA
--AAGGTCAC
 G C T A C G T A G T A C C T G A A C T G A C T G A C G T A T G C C G T A C G T A
A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:10
Score:0.70
Offset:3
Orientation:forward strand
Alignment:AACAGGTCAA-----
---AGGTCAAGGTCA
 G C T A C G T A G T A C C T G A A C T G A C T G A C G T A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A