Information for 2-TCAGGRYGCCCTGDCC (Motif 2)

C G A T A T G C G T C A A C T G A C T G C T A G G A C T C T A G G A T C G T A C G T A C A G C T A T C G C T G A A G T C G A T C
Reverse Opposite:
C T A G A C T G G A C T A T G C C T G A C A T G C A T G C T A G G A T C C T G A A G T C T G A C T A G C A C G T A T C G G C T A
p-value:1e-42
log p-value:-9.843e+01
Information Content per bp:1.646
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif5.62%
Number of Background Sequences with motif111.9
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets50.9 +/- 20.8bp
Average Position of motif in Background49.3 +/- 32.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TCAGGRYGCCCTGDCC
GGTCANNGTGACCTN---
 A C G T A C G T C G A T A T G C G T C A A C T G A C T G C T A G G A C T C T A G G A T C G T A C G T A C A G C T A T C G C T G A A G T C G A T C
C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TCAGGRYGCCCTGDCC
GCAGCCAAGCGTGACN
 C G A T A T G C G T C A A C T G A C T G C T A G G A C T C T A G G A T C G T A C G T A C A G C T A T C G C T G A A G T C G A T C
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

ESR2/MA0258.2/Jaspar

Match Rank:3
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TCAGGRYGCCCTGDCC-
--AGGNCANNGTGACCT
 C G A T A T G C G T C A A C T G A C T G C T A G G A C T C T A G G A T C G T A C G T A C A G C T A T C G C T G A A G T C G A T C A C G T
A C G T A C G T C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T

ESR1/MA0112.3/Jaspar

Match Rank:4
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----TCAGGRYGCCCTGDCC
AAGGTCACGGTGACCTG---
 A C G T A C G T A C G T A C G T C G A T A T G C G T C A A C T G A C T G C T A G G A C T C T A G G A T C G T A C G T A C A G C T A T C G C T G A A G T C G A T C
C T G A T C G A A C T G C T A G A C G T G A T C C T G A T G A C T A C G T C A G A G C T C T A G T C G A A T G C G T A C A G C T A C T G A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TCAGGRYGCCCTGDCC
SCAGYCADGCATGAC-
 C G A T A T G C G T C A A C T G A C T G C T A G G A C T C T A G G A T C G T A C G T A C A G C T A T C G C T G A A G T C G A T C
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.57
Offset:11
Orientation:reverse strand
Alignment:TCAGGRYGCCCTGDCC-
-----------TGACCT
 C G A T A T G C G T C A A C T G A C T G C T A G G A C T C T A G G A T C G T A C G T A C A G C T A T C G C T G A A G T C G A T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.56
Offset:11
Orientation:reverse strand
Alignment:TCAGGRYGCCCTGDCC---
-----------TGACCTYA
 C G A T A T G C G T C A A C T G A C T G C T A G G A C T C T A G G A T C G T A C G T A C A G C T A T C G C T G A A G T C G A T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.54
Offset:11
Orientation:reverse strand
Alignment:TCAGGRYGCCCTGDCC---
-----------TGACCYCT
 C G A T A T G C G T C A A C T G A C T G C T A G G A C T C T A G G A T C G T A C G T A C A G C T A T C G C T G A A G T C G A T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

PAX5/MA0014.2/Jaspar

Match Rank:9
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----TCAGGRYGCCCTGDCC
GAGGGCAGCCAAGCGTGAC-
 A C G T A C G T A C G T A C G T C G A T A T G C G T C A A C T G A C T G C T A G G A C T C T A G G A T C G T A C G T A C A G C T A T C G C T G A A G T C G A T C
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C A C G T

EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TCAGGRYGCCCTGDCC---
GGYAGCAYDTGCTDCCCNNN
 A C G T C G A T A T G C G T C A A C T G A C T G C T A G G A C T C T A G G A T C G T A C G T A C A G C T A T C G C T G A A G T C G A T C A C G T A C G T A C G T
A C T G C T A G G A T C C G T A C T A G A G T C T G C A G A C T C G T A A C G T T C A G A G T C A C G T C T G A A G T C A G T C G A T C C G T A T C A G T A C G