Information for 1-NAGGTCASSSTGACCT (Motif 1)

T A G C T C G A C A T G C T A G C A G T A G T C C T G A A T G C A T C G T A C G G A C T T C A G G T C A G A T C G T A C A G C T
Reverse Opposite:
T C G A C A T G C T A G C A G T A G T C C T G A A T G C T A C G A T C G G A C T T C A G G T C A G A T C G T A C A G C T A C T G
p-value:1e-431
log p-value:-9.930e+02
Information Content per bp:1.585
Number of Target Sequences with motif294.0
Percentage of Target Sequences with motif38.43%
Number of Background Sequences with motif286.5
Percentage of Background Sequences with motif0.62%
Average Position of motif in Targets53.5 +/- 16.8bp
Average Position of motif in Background46.6 +/- 32.7bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.96
Offset:2
Orientation:reverse strand
Alignment:NAGGTCASSSTGACCT-
--GGTCANNGTGACCTN
 T A G C T C G A C A T G C T A G C A G T A G T C C T G A A T G C A T C G T A C G G A C T T C A G G T C A G A T C G T A C A G C T A C G T
A C G T A C G T C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T

ESR1/MA0112.3/Jaspar

Match Rank:2
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:NAGGTCASSSTGACCT-
CAGGTCACCGTGACCTT
 T A G C T C G A C A T G C T A G C A G T A G T C C T G A A T G C A T C G T A C G G A C T T C A G G T C A G A T C G T A C A G C T A C G T
T G A C T C G A A C T G A T C G A C G T A G T C T C G A A G T C A T G C A C T G A G C T C T A G G T C A A G T C G T A C A G C T G A C T

ESR2/MA0258.2/Jaspar

Match Rank:3
Score:0.95
Offset:1
Orientation:reverse strand
Alignment:NAGGTCASSSTGACCT
-AGGNCANNGTGACCT
 T A G C T C G A C A T G C T A G C A G T A G T C C T G A A T G C A T C G T A C G G A C T T C A G G T C A G A T C G T A C A G C T
A C G T C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T

PPARG/MA0066.1/Jaspar

Match Rank:4
Score:0.86
Offset:-2
Orientation:reverse strand
Alignment:--NAGGTCASSSTGACCT--
AGTAGGTCACNGTGACCTAC
 A C G T A C G T T A G C T C G A C A T G C T A G C A G T A G T C C T G A A T G C A T C G T A C G G A C T T C A G G T C A G A T C G T A C A G C T A C G T A C G T
G C T A A T C G C A G T C T G A C T A G A C T G C A G T A T G C G T C A G A T C T A G C A C T G C A G T A T C G T G C A G A T C A T G C A G C T C G T A A T G C

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.69
Offset:10
Orientation:reverse strand
Alignment:NAGGTCASSSTGACCT
----------TGACCT
 T A G C T C G A C A T G C T A G C A G T A G T C C T G A A T G C A T C G T A C G G A C T T C A G G T C A G A T C G T A C A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.67
Offset:10
Orientation:reverse strand
Alignment:NAGGTCASSSTGACCT--
----------TGACCTYA
 T A G C T C G A C A T G C T A G C A G T A G T C C T G A A T G C A T C G T A C G G A C T T C A G G T C A G A T C G T A C A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:7
Score:0.66
Offset:10
Orientation:reverse strand
Alignment:NAGGTCASSSTGACCT--
----------TGACCYCT
 T A G C T C G A C A T G C T A G C A G T A G T C C T G A A T G C A T C G T A C G G A C T T C A G G T C A G A T C G T A C A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.64
Offset:10
Orientation:reverse strand
Alignment:NAGGTCASSSTGACCT----
----------TGACCTTGAT
 T A G C T C G A C A T G C T A G C A G T A G T C C T G A A T G C A T C G T A C G G A C T T C A G G T C A G A T C G T A C A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.64
Offset:9
Orientation:reverse strand
Alignment:NAGGTCASSSTGACCT-
---------GTGACCTT
 T A G C T C G A C A T G C T A G C A G T A G T C C T G A A T G C A T C G T A C G G A C T T C A G G T C A G A T C G T A C A G C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:10
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:NAGGTCASSSTGACCT--
--TGACCCAGTGACCTAC
 T A G C T C G A C A T G C T A G C A G T A G T C C T G A A T G C A T C G T A C G G A C T T C A G G T C A G A T C G T A C A G C T A C G T A C G T
A C G T A C G T G C A T T A C G G C T A A T G C G T A C A G T C T G C A T A C G C G A T C A T G T G C A T G A C G A T C G A C T T C G A T A G C