Information for 11-CAGAACTCGA (Motif 38)

A G T C C G T A A C T G C G T A C G T A A G T C A C G T A G T C A C T G C G T A
Reverse Opposite:
A C G T A G T C A C T G C G T A A C T G A C G T C G A T A G T C A C G T A C T G
p-value:1e-7
log p-value:-1.697e+01
Information Content per bp:1.957
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.51%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets67.2 +/- 7.9bp
Average Position of motif in Background16.8 +/- 2.8bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0116.1_Nkx2-9/Jaspar

Match Rank:1
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CAGAACTCGA---
TTTTAAGTACTTAAATT
 A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A C G T A A G T C A C G T A G T C A C T G C G T A A C G T A C G T A C G T
C G A T G A C T G C A T C G A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C G T A G C T A C G A T G A C T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CAGAACTCGA-
-RSCACTYRAG
 A G T C C G T A A C T G C G T A C G T A A G T C A C G T A G T C A C T G C G T A A C G T
A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:3
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CAGAACTCGA---
TTCNAAGTACTTNNNNN
 A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A C G T A A G T C A C G T A G T C A C T G C G T A A C G T A C G T A C G T
C A G T A C G T A G T C T G A C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A T C G T A C G G C T A C A T G A G C T

NKX2-8/MA0673.1/Jaspar

Match Rank:4
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CAGAACTCGA-
--CCACTTGAA
 A G T C C G T A A C T G C G T A C G T A A G T C A C G T A G T C A C T G C G T A A C G T
A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A

PB0099.1_Zfp691_1/Jaspar

Match Rank:5
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CAGAACTCGA---
CGAACAGTGCTCACTAT
 A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A C G T A A G T C A C G T A G T C A C T G C G T A A C G T A C G T A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:6
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CAGAACTCGA
MRSCACTYAA
 A G T C C G T A A C T G C G T A C G T A A G T C A C G T A G T C A C T G C G T A
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CAGAACTCGA-
-NSCACTYVAV
 A G T C C G T A A C T G C G T A C G T A A G T C A C G T A G T C A C T G C G T A A C G T
A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

ONECUT1/MA0679.1/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CAGAACTCGA----
AAAAAATCGATAAT
 A G T C C G T A A C T G C G T A C G T A A G T C A C G T A G T C A C T G C G T A A C G T A C G T A C G T A C G T
T G C A C T G A C G T A G C T A C T G A C T G A A C G T A G T C C T A G C G T A G A C T C G T A G C T A G A C T

PH0112.1_Nkx2-3/Jaspar

Match Rank:9
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----CAGAACTCGA--
CNTTAAGTACTTAANG
 A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A C G T A A G T C A C G T A G T C A C T G C G T A A C G T A C G T
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G

ONECUT2/MA0756.1/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CAGAACTCGA----
AAAAAATCGATAAT
 A G T C C G T A A C T G C G T A C G T A A G T C A C G T A G T C A C T G C G T A A C G T A C G T A C G T A C G T
T C G A C T G A C G T A G C T A C T G A C T G A A C G T G T A C T C A G G C T A G C A T C G T A G C T A G C A T