Information for 4-CCGGWTGCCATGG (Motif 8)

A G T C G T A C A C T G A C T G C G A T A C G T A C T G A G T C A G T C C G T A A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A A C G T A C T G A C T G A G T C C G T A C G T A A G T C A G T C A C T G A C T G
p-value:1e-10
log p-value:-2.454e+01
Information Content per bp:1.941
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.8 +/- 18.9bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.79
Offset:2
Orientation:forward strand
Alignment:CCGGWTGCCATGG---
--NGTTGCCATGGCAA
 A G T C G T A C A C T G A C T G C G A T A C G T A C T G A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.78
Offset:2
Orientation:forward strand
Alignment:CCGGWTGCCATGG---
--GGTTGCCATGGCAA
 A G T C G T A C A C T G A C T G C G A T A C G T A C T G A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C G T A C G T
A C G T A C G T C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx1/MA0509.1/Jaspar

Match Rank:3
Score:0.77
Offset:3
Orientation:reverse strand
Alignment:CCGGWTGCCATGG----
---GTTGCCATGGNAAC
 A G T C G T A C A C T G A C T G C G A T A C G T A C T G A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:4
Score:0.76
Offset:1
Orientation:forward strand
Alignment:CCGGWTGCCATGG----
-CGGTTGCCATGGCAAC
 A G T C G T A C A C T G A C T G C G A T A C G T A C T G A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:5
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:CCGGWTGCCATGG----
--KGTTGCCATGGCAAC
 A G T C G T A C A C T G A C T G C G A T A C G T A C T G A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

PB0055.1_Rfx4_1/Jaspar

Match Rank:6
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:CCGGWTGCCATGG--
NNCGTTGCTATGGNN
 A G T C G T A C A C T G A C T G C G A T A C G T A C T G A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

RFX2/MA0600.2/Jaspar

Match Rank:7
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CCGGWTGCCATGG-----
--CGTTGCCATGGCAACG
 A G T C G T A C A C T G A C T G C G A T A C G T A C T G A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX3/MA0798.1/Jaspar

Match Rank:8
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:CCGGWTGCCATGG-----
--CGTTGCCATGGCAACN
 A G T C G T A C A C T G A C T G C G A T A C G T A C T G A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX5/MA0510.2/Jaspar

Match Rank:9
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:CCGGWTGCCATGG-----
--NGTTGCCATGGCAACG
 A G T C G T A C A C T G A C T G C G A T A C G T A C T G A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C C T A G A C G T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T C G A G A T C T A C G

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CCGGWTGCCATGG
-CTGTTGCTAGGS
 A G T C G T A C A C T G A C T G C G A T A C G T A C T G A G T C A G T C C G T A A C G T A C T G A C T G
A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G