Information for 2-CGCGGCTTTTTGACCS (Motif 3)

G T A C A C T G A T G C T A C G T A C G G T A C G A C T A C G T A C G T A G C T A C G T C T A G G T C A T A G C G T A C T A G C
Reverse Opposite:
A T C G A C T G A T C G A C G T A G T C C G T A T C G A T C G A G T C A C T G A A C T G A T G C A G T C A T C G T A G C A C T G
p-value:1e-14
log p-value:-3.279e+01
Information Content per bp:1.699
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif9.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets43.1 +/- 24.6bp
Average Position of motif in Background56.1 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rarg/MA0859.1/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CGCGGCTTTTTGACCS-
-TTGACCTTTTGACCTT
 G T A C A C T G A T G C T A C G T A C G G T A C G A C T A C G T A C G T A G C T A C G T C T A G G T C A T A G C G T A C T A G C A C G T
A C G T C G A T A G C T T C A G T G C A T G A C G T A C A G C T G A C T G C A T A G C T T C A G T G C A T G A C A G T C A G C T A G C T

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CGCGGCTTTTTGACCS-
--TGACCTTTTGACCTC
 G T A C A C T G A T G C T A C G T A C G G T A C G A C T A C G T A C G T A G C T A C G T C T A G G T C A T A G C G T A C T A G C A C G T
A C G T A C G T A G C T C T A G C G T A G T A C A G T C A C G T G A C T G C A T C A G T T C A G G T C A A G T C A G T C G A C T A G T C

Rarb/MA0857.1/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CGCGGCTTTTTGACCS--
--TGACCTTTTGACCTTT
 G T A C A C T G A T G C T A C G T A C G G T A C G A C T A C G T A C G T A G C T A C G T C T A G G T C A T A G C G T A C T A G C A C G T A C G T
A C G T A C G T G A C T T C A G T C G A T G A C A G T C A G C T G A C T C G A T A G C T T A C G G T C A T G A C G T A C A G C T G A C T C G A T

RARA/MA0729.1/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CGCGGCTTTTTGACCS-
CATTGACCTTTTGACCTC
 A C G T G T A C A C T G A T G C T A C G T A C G G T A C G A C T A C G T A C G T A G C T A C G T C T A G G T C A T A G C G T A C T A G C A C G T
T G A C G T C A C G A T A G C T C T A G C G T A G T A C G T A C A C G T G C A T G C A T A G C T A T C G T C G A G T A C A G T C A G C T G A T C

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CGCGGCTTTTTGACCS---
----WCATTTTGKCCTCYT
 G T A C A C T G A T G C T A C G T A C G G T A C G A C T A C G T A C G T A G C T A C G T C T A G G T C A T A G C G T A C T A G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A G A T C C T G A A C G T A C G T A C G T C A G T C T A G A C G T G T A C G T A C G A C T A G T C G A T C A C G T

PB0009.1_E2F3_1/Jaspar

Match Rank:6
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CGCGGCTTTTTGACCS
ANCGCGCGCCCTTNN-----
 A C G T A C G T A C G T A C G T G T A C A C T G A T G C T A C G T A C G G T A C G A C T A C G T A C G T A G C T A C G T C T A G G T C A T A G C G T A C T A G C
C G T A C G A T T A G C C T A G T A G C A T C G A T G C A C T G A G T C A T G C G A T C C G A T G C A T C G T A A G C T A C G T A C G T A C G T A C G T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CGCGGCTTTTTGACCS
-AGGNCANNGTGACCT
 G T A C A C T G A T G C T A C G T A C G G T A C G A C T A C G T A C G T A G C T A C G T C T A G G T C A T A G C G T A C T A G C
A C G T C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.54
Offset:10
Orientation:reverse strand
Alignment:CGCGGCTTTTTGACCS
----------TGACCT
 G T A C A C T G A T G C T A C G T A C G G T A C G A C T A C G T A C G T A G C T A C G T C T A G G T C A T A G C G T A C T A G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

PB0008.1_E2F2_1/Jaspar

Match Rank:9
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----CGCGGCTTTTTGACCS
NTCGCGCGCCTTNNN-----
 A C G T A C G T A C G T A C G T G T A C A C T G A T G C T A C G T A C G G T A C G A C T A C G T A C G T A G C T A C G T C T A G G T C A T A G C G T A C T A G C
C G T A C G A T A T G C C T A G T A G C A T C G A T G C A C T G A T G C A T G C G A C T C G A T G C A T C G T A A G C T A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:10
Score:0.54
Offset:10
Orientation:reverse strand
Alignment:CGCGGCTTTTTGACCS--
----------TGACCYCT
 G T A C A C T G A T G C T A C G T A C G G T A C G A C T A C G T A C G T A G C T A C G T C T A G G T C A T A G C G T A C T A G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T