Information for 5-AGTCATTAAA (Motif 6)

C G T A A T C G C G A T G T A C C G T A A C G T C G A T C T G A C G T A C G T A
Reverse Opposite:
C G A T C G A T A G C T C G T A C G T A A C G T A C T G G C T A A T G C A C G T
p-value:1e-13
log p-value:-3.008e+01
Information Content per bp:1.859
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.13%
Number of Background Sequences with motif86.9
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets54.2 +/- 29.1bp
Average Position of motif in Background44.3 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0073.1_Hoxc9/Jaspar

Match Rank:1
Score:0.81
Offset:-3
Orientation:forward strand
Alignment:---AGTCATTAAA---
GGAGGTCATTAATTAT
 A C G T A C G T A C G T C G T A A T C G C G A T G T A C C G T A A C G T C G A T C T G A C G T A C G T A A C G T A C G T A C G T
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:2
Score:0.79
Offset:1
Orientation:forward strand
Alignment:AGTCATTAAA-
-GTCGTAAAAT
 C G T A A T C G C G A T G T A C C G T A A C G T C G A T C T G A C G T A C G T A A C G T
A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

PH0064.1_Hoxb9/Jaspar

Match Rank:3
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--AGTCATTAAA----
AGAGCCATAAAATTCG
 A C G T A C G T C G T A A T C G C G A T G T A C C G T A A C G T C G A T C T G A C G T A C G T A A C G T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

PH0120.1_Nkx6-3/Jaspar

Match Rank:4
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---AGTCATTAAA----
CNNANTAATTAATTNNC
 A C G T A C G T A C G T C G T A A T C G C G A T G T A C C G T A A C G T C G A T C T G A C G T A C G T A A C G T A C G T A C G T A C G T
T G A C T C G A T G C A T C G A A C T G G A C T T G C A C G T A G A C T G A C T C T G A G C T A C G A T C G A T C G A T A C G T G A T C

NKX6-1/MA0674.1/Jaspar

Match Rank:5
Score:0.76
Offset:1
Orientation:forward strand
Alignment:AGTCATTAAA
-GTAATTAA-
 C G T A A T C G C G A T G T A C C G T A A C G T C G A T C T G A C G T A C G T A
A C G T T A C G A G C T G T C A G T C A A C G T G C A T T C G A G C T A A C G T

MEOX2/MA0706.1/Jaspar

Match Rank:6
Score:0.76
Offset:0
Orientation:forward strand
Alignment:AGTCATTAAA
AGTAATTAAC
 C G T A A T C G C G A T G T A C C G T A A C G T C G A T C T G A C G T A C G T A
C T G A T A C G G A C T T G C A G T C A C A G T A G C T C T G A C G T A T G A C

HOXA10/MA0899.1/Jaspar

Match Rank:7
Score:0.75
Offset:0
Orientation:forward strand
Alignment:AGTCATTAAA-
GGTAATAAAAA
 C G T A A T C G C G A T G T A C C G T A A C G T C G A T C T G A C G T A C G T A A C G T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

Arid3a/MA0151.1/Jaspar

Match Rank:8
Score:0.75
Offset:4
Orientation:forward strand
Alignment:AGTCATTAAA
----ATTAAA
 C G T A A T C G C G A T G T A C C G T A A C G T C G A T C T G A C G T A C G T A
A C G T A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A

Hoxd9/MA0913.1/Jaspar

Match Rank:9
Score:0.74
Offset:1
Orientation:forward strand
Alignment:AGTCATTAAA-
-GCAATAAAAA
 C G T A A T C G C G A T G T A C C G T A A C G T C G A T C T G A C G T A C G T A A C G T
A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A

NKX6-2/MA0675.1/Jaspar

Match Rank:10
Score:0.74
Offset:1
Orientation:forward strand
Alignment:AGTCATTAAA
-CTAATTAA-
 C G T A A T C G C G A T G T A C C G T A A C G T C G A T C T G A C G T A C G T A
A C G T A T G C G A C T G T C A G C T A C G A T G C A T C T G A G C T A A C G T