Information for 3-AGGATTAAAK (Motif 2)

C T G A C T A G A C T G G T C A C G A T A C G T C G T A C G T A C G T A A C G T
Reverse Opposite:
T G C A G C A T G C A T C G A T C G T A C G T A A C G T A G T C G A T C A G C T
p-value:1e-18
log p-value:-4.259e+01
Information Content per bp:1.706
Number of Target Sequences with motif50.0
Percentage of Target Sequences with motif5.91%
Number of Background Sequences with motif574.1
Percentage of Background Sequences with motif1.23%
Average Position of motif in Targets45.3 +/- 28.5bp
Average Position of motif in Background52.4 +/- 33.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OTX2/MA0712.1/Jaspar

Match Rank:1
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:AGGATTAAAK
NGGATTAA--
 C T G A C T A G A C T G G T C A C G A T A C G T C G T A C G T A C G T A A C G T
T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:2
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-AGGATTAAAK
VRGGATTARN-
 A C G T C T G A C T A G A C T G G T C A C G A T A C G T C G T A C G T A C G T A A C G T
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:3
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:AGGATTAAAK
GGGATTAA--
 C T G A C T A G A C T G G T C A C G A T A C G T C G T A C G T A C G T A A C G T
C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:4
Score:0.89
Offset:0
Orientation:forward strand
Alignment:AGGATTAAAK
RGGATTAR--
 C T G A C T A G A C T G G T C A C G A T A C G T C G T A C G T A C G T A A C G T
T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:5
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:AGGATTAAAK
GGGATTANN-
 C T G A C T A G A C T G G T C A C G A T A C G T C G T A C G T A C G T A A C G T
C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T

OTX1/MA0711.1/Jaspar

Match Rank:6
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:AGGATTAAAK
CGGATTAN--
 C T G A C T A G A C T G G T C A C G A T A C G T C G T A C G T A C G T A A C G T
T A G C T A C G A T C G G T C A A C G T G C A T C G T A C T G A A C G T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-AGGATTAAAK
NGGGATTA---
 A C G T C T G A C T A G A C T G G T C A C G A T A C G T C G T A C G T A C G T A A C G T
T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:8
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-AGGATTAAAK
GNGGATTAGN-
 A C G T C T G A C T A G A C T G G T C A C G A T A C G T C G T A C G T A C G T A A C G T
C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:9
Score:0.85
Offset:1
Orientation:reverse strand
Alignment:AGGATTAAAK
-GGATTAGC-
 C T G A C T A G A C T G G T C A C G A T A C G T C G T A C G T A C G T A A C G T
A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T

PH0124.1_Obox5_1/Jaspar

Match Rank:10
Score:0.85
Offset:-4
Orientation:forward strand
Alignment:----AGGATTAAAK---
TAGAGGGATTAAATTTC
 A C G T A C G T A C G T A C G T C T G A C T A G A C T G G T C A C G A T A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
G C A T C T G A T C A G T C G A T C A G C T A G C A T G C G T A A C G T C G A T C G T A C G T A G C T A G A C T A G C T G C A T G T A C