Information for 7-GGCAAGAAGA (Motif 13)

C A T G A T C G A T G C C T G A C G T A A C T G T G C A C G T A A C T G C T G A
Reverse Opposite:
A G C T T G A C A C G T A C G T A G T C A C G T A G C T T A C G A T G C G T A C
p-value:1e-7
log p-value:-1.678e+01
Information Content per bp:1.838
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.41%
Number of Background Sequences with motif263.6
Percentage of Background Sequences with motif0.54%
Average Position of motif in Targets48.1 +/- 25.2bp
Average Position of motif in Background48.6 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GGCAAGAAGA
AAGGCAAGTGT-
 A C G T A C G T C A T G A T C G A T G C C T G A C G T A A C T G T G C A C G T A A C T G C T G A
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:2
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GGCAAGAAGA
----NGAAGC
 C A T G A T C G A T G C C T G A C G T A A C T G T G C A C G T A A C T G C T G A
A C G T A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C

PH0013.1_Cdx2/Jaspar

Match Rank:3
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GGCAAGAAGA---
AAAGGTAATAAAATTT
 A C G T A C G T A C G T C A T G A T C G A T G C C T G A C G T A A C T G T G C A C G T A A C T G C T G A A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GGCAAGAAGA-
-CCAGGAACAG
 C A T G A T C G A T G C C T G A C G T A A C T G T G C A C G T A A C T G C T G A A C G T
A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:5
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GGCAAGAAGA---
-GWAAYHTGAKMC
 C A T G A T C G A T G C C T G A C G T A A C T G T G C A C G T A A C T G C T G A A C G T A C G T A C G T
A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GGCAAGAAGA
CWGGCGGGAA--
 A C G T A C G T C A T G A T C G A T G C C T G A C G T A A C T G T G C A C G T A A C T G C T G A
T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GGCAAGAAGA
CAGGTAAGTAT-
 A C G T A C G T C A T G A T C G A T G C C T G A C G T A A C T G T G C A C G T A A C T G C T G A
T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GGCAAGAAGA---
-GWAAYHTGABMC
 C A T G A T C G A T G C C T G A C G T A A C T G T G C A C G T A A C T G C T G A A C G T A C G T A C G T
A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

CDX2/MA0465.1/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GGCAAGAAGA
AAGCCATAAAA
 A C G T C A T G A T C G A T G C C T G A C G T A A C T G T G C A C G T A A C T G C T G A
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:10
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----GGCAAGAAGA
TACTGGAAAAAAAA
 A C G T A C G T A C G T A C G T C A T G A T C G A T G C C T G A C G T A A C T G T G C A C G T A A C T G C T G A
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A